Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02553 ATGTCAAAACCTAGAACCTTCTTTTTTTTCAAAGCATCACCTCCCCAATCATCACCATTACCACCTCCCTCTCATCGCAACAAAACATTTTCCGACGCAATAGTTGACGAAAACATTGAAACCGCTCGTTCCCTCATAACTAAATGGAACTCTATTTCCACTTCTAACCCTTCTTATTATCTTTTCACTAACACTCGTCAAGAAGCTAAACAGTATCTTAACGCTGTTAAGAGTCTACAATCCGCTATGCAGTACCTCGTCGCACGTGATTCCGCCTCCGATATACTCATTCAATCACAGTCCTTAATGCAACTCGCTATGAAGAGACTCGAAACAGAGTTTTATCGAATATTAACACAAAACAGAGACCGATTCAACTCTGAATCACTCTCCATCTCCGTTTACTCCTCCACTGATAGACGGAGTAGTATATCCGACGAAGATGAAACTTCCGATGACGAGTTTTCGCTCGCCGGAGACTCAGTTTCCATGACTGCCATAGCGGATTTGAAAGCAATTGCTGAATGTATGATATTCACCGGTTACAGTAAAGAGTGCGTGAAGATTTACGTAATCGTGAGAAAATCGATTGTTGATGAGGTACTGTACAATCTCGGAGTTGAGAAACTCAGTTTTTCCCAGGTTCAGAAAATGGATTGGGAATTGATTGAGTGGAAGATTAAGTGCTGGTTGAACGCCGTCAAGGTCGCTGTCGGTACTCTATTTCAAGGCGAGAGAACACTTTGCAATTACGTTTTCGGTCCGCCGGAGAAGAAAATCGCCGAATCATGTTTCGCCGAAATTTGCAGAGACAGTGCTTTAATGTTGTTCGAATTCGCTGAAAACGTAGCGAAGTGTAAGAAAACGCCGGAAAAAATGTTCAGAACGCTTGATTTGTACGAAGCAATATCCGAAAATTGGCAACAAATTGAATCAATCTTCTCGTCAGAATCAGCGTCGGCGATCCGTTCGCAGGTCATCGCTTCACAGGTGAGGCTAGGCGAAACCGTTAGAACGATGCTAACGGAATTTGAATCGCAGATTCAGAAGGAATCTTCGAAGATTCCAGTGCCAGGTGGAGGAGTCCATCCACTCACGCGCTACGTGATGAACTACATCGCACTCCTCGCCGATTACAGCGAAAATCTCACCGATATAATCGCCGATTGGCCACAAACTCCGTTACCGGAGTCTTACTACAAAAGTCCAAGCTACGACGAGAATAATCCACCGTCGGAGATAGCGAAACGCCTCGCGTGGCTGATTCTAGTGGTTCTCTGTAAACTCGACGGAAAAGCAGAACTATACAAAGACGTTGCACTCTCTTACCTATTTCTCGCGAATAACATGCAATACGTCGTCGTAAAGGTTCGTAAATCGAATCTAGGGTTTATTCTCGGCGAGGATTGGTTATCGAAGCACGAGTTGAAGGTGAAGGAGCATGTTTCCAAGTACGAGCGCATGGCGTGGAGCAACGTGCTATCGTCGACTCCATAA 1497 0.4462 MSKPRTFFFFKASPPQSSPLPPPSHRNKTFSDAIVDENIETARSLITKWNSISTSNPSYYLFTNTRQEAKQYLNAVKSLQSAMQYLVARDSASDILIQSQSLMQLAMKRLETEFYRILTQNRDRFNSESLSISVYSSTDRRSSISDEDETSDDEFSLAGDSVSMTAIADLKAIAECMIFTGYSKECVKIYVIVRKSIVDEVLYNLGVEKLSFSQVQKMDWELIEWKIKCWLNAVKVAVGTLFQGERTLCNYVFGPPEKKIAESCFAEICRDSALMLFEFAENVAKCKKTPEKMFRTLDLYEAISENWQQIESIFSSESASAIRSQVIASQVRLGETVRTMLTEFESQIQKESSKIPVPGGGVHPLTRYVMNYIALLADYSENLTDIIADWPQTPLPESYYKSPSYDENNPPSEIAKRLAWLILVVLCKLDGKAELYKDVALSYLFLANNMQYVVVKVRKSNLGFILGEDWLSKHELKVKEHVSKYERMAWSNVLSSTP 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02553 498 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 3 496 - -
Car01g02553 498 Pfam Exo70 exocyst complex subunit 229 495 IPR046364 GO:0000145|GO:0005546|GO:0006887
Car01g02553 498 PANTHER EXOCYST COMPLEX PROTEIN EXO70 3 496 IPR004140 GO:0000145|GO:0006887
Car01g02553 498 Gene3D Exocyst complex component Exo70 46 498 - -
Car01g02553 498 SUPERFAMILY Cullin repeat-like 66 495 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02553 Car-Chr1 51254113 51256296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02553 9 498 EXO70 exocyst subunit family AT5G59730 50.098 7.75e-163 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02553 K07195 - gmx:100801773 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02553 01 51254113 51256296 Car01g02553 01 51254113 51256296 ECH