Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02541 ATGGCAATCAAGGAAGGAGAAAACTGCGCCGCCGAACAGAGAGCCGCTGAATGGGGCTTAGTACTCAAAACAGACGCTGAGACAGGGAAACCGCAAGGAGTGGCAGTTAGAAAGTCCGGCGACGAAGATTCCAATGTTAAAGTTGCAACTAAAAGGAATTCGAACAACTCCGGTAGAAATTCCGGTGAATCTTCGGAAGGCGGTGAAGTACGCGGGTTTCCGAGAGTTTCGGAGGATTTGAAAGATGCTTTATCGGCTTTTCAACAAACTTTTGTGGTTTCGGATGCTACCAAACCCGATTACCCGATTTTGTATGCAAGTGCGGGTTTCTTCAAAATGACGGGTTATACATCAAAAGAAATCATGGGAAGAAACTGTCGATTTTTACAGGGTTCGGATACGGATCCGGAAGACGTGGCAAAGATAAGAGAAGCGTTGGAAGGTGGGAAAAGTTACTGTGGAAGGTTACTGAATTACAAGAAGGATGGAACTCCCTTCTGGAACCTTCTCACTATTTCACCCATCAAAGATGAAGATGGCAATGTGCTCAAGTTCATTGGAATGCTTGTGGAAGTTAACAAACATACAGAGGGGTCCAAAGAGAAGAAGCTACGGCCCAATGGGTTGCCCGAATCCTTGATTCGATATGATGCTCGTGAAAAAGAGAAGGCTACATCTTCTGTATCTGAGTTACTACAAGCCATAAAGCGTCCCCGTGCATTCAGTGAATCCGGAAACCGTCCCTTCATTAGAAAATCAGGAGGAGGTTCTGAAAATGTTGAAGAAAATGCAGAGAAGCTAGACAAGAAATTAAGGAGAAAATCTGATAGTGCAGCTACTTTTAGACCAAAACCACAACCAAGAATAAGTAGAAATTCAATGGAACGAATCAGTGAACTACCTGAAAATAAACTTAAAAGCTGTCATCGCCGTTCTTTCATGGGGTTCATCAGGAAAAGTCATTCCATTGATGAAAGCATTGATAATGAAGTTATTGTAGACATCAGCTCTGAGAGTGAGGATGATGAGAGACATGATAGCTTTGAATTTGACGACAAAGAAAAACACAGAGAAAAGCGAAAAGGTTTTGATCTTGCTACCACACTTGAGCGAATTGAGAAAAACTTTGTCATTACTGATCCAAGACTTCCTGACAATCCTATAATATTTGCATCTGATAGTTTCTTAGAGCTTACAGAGTTTAGTCGTGAAGAAATCTTGGGAAGAAATTGCAGGTTTCTGCAAGGACCAGAAACTGATCCAGCAACTGTGAGAAAAATTAGAGAGGCAATTGACAACCAAACAGAAGTTACCGTGCAACTAATCAATTATACAAAGAGTGGTAAAAAGTTCTGGAACCTATTTCATTTGCAACCTATGCGCGATCATAAGGGAGAAGTACAATACTTTATTGGTGTTCAACTTGATGGTAGTCAACATGTAGAGCCTCTTCACAACTGCATTGCAGAAGATTCTGCAAAGGAGGGAGAACAATTGGTAAAAAAAACAGCAGAAAATGTTGGTGAGGCAGTAAGGGAACTTCCAGATGCTAATCAGAAACCGGATGATTTATGGATGAATCATTCGAAGGTGGTTCGTCCCAAACCTCATAGGAAGGATGATGATGCTTGGAGAGCTATCCAAAAGATTCTAGAAAATGGAGAACAGATAGGCCTAAAACACTTTAGGCCAATTAAACCTTTGGGGTCTGGAGACACTGGAAGTGTGCATCTAGTGGAGCTAGAGGGAACTGGTCAACACTTTGCCATGAAGGCTATGGATAAGGGTGTTATGCTCAATCGCAACAAGGTGCATAGAGCTTGCACTGAAAGAGAAATCCTTGACATGTTGGACCACCCTTTTTTACCCGCATTATATGCTTCCTTTCAGACCAAAACACATGTTTGTTTGATAACTGATTACTATCCCGGTGGAGAACTATTCATGCTTCTTGAGCGGGAGCCTACAAAGGTTCTCAAGGAAGATTCTGTGAGATTTTATGCTGCTGAGGTAGTGATTGCATTGGAGTACCTTCATTGTCAAGGCATAATTTATCGGGATTTGAAGCCAGAAAATGTGTTGATCCAGAGCAATGGGCATGTATCTCTAACAGATTTTGATTTGTCTTGTTTAACATCTTGCAAGCCACAGCTTATAATTCCAGCTACAGAGGAAAAGAATAAGAGGAAGAAAAATAAGAAGAGACAAGAGAAAAGTCAACAGGTTCCAATGTTTATGGCTGAACCAATGAGAGCCTCCAATTCTTTTGTTGGCACGGAAGAGTACATAGCTCCGGAAATTATAACTGGTTCAGGTCATACTAGTGCTGTGGATTGGTGGGCTCTAGGTGTTCTTCTGTATGAAATGCTTTATGGGTATACGCCATTCAGAGGAAAGACAAGACAGAAGACATTTGCAAATATTCTTCACAAAGATCTTAAATTTCCTAAAAGCAAACCGGTAAGTCCCCATGCAAAGCAGCTAATTTACTGGTTGTTGCACAGAGATCCCAAAAACAGATTGGGTTCACTGAAAGGAGCAAATGAAATTAAGTGCCATCCATTCTTCAGGAATATCAATTGGGCTCTAATTCGTGACACGAAACCTCCTGAGCTTGATGCTCCTATCTCACCGGAAAATGATGAAGAAATCGACCCTGGTCTAGAGGATCTACAGAAAAATGTTTTCTGA 2691 0.4143 MAIKEGENCAAEQRAAEWGLVLKTDAETGKPQGVAVRKSGDEDSNVKVATKRNSNNSGRNSGESSEGGEVRGFPRVSEDLKDALSAFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEIMGRNCRFLQGSDTDPEDVAKIREALEGGKSYCGRLLNYKKDGTPFWNLLTISPIKDEDGNVLKFIGMLVEVNKHTEGSKEKKLRPNGLPESLIRYDAREKEKATSSVSELLQAIKRPRAFSESGNRPFIRKSGGGSENVEENAEKLDKKLRRKSDSAATFRPKPQPRISRNSMERISELPENKLKSCHRRSFMGFIRKSHSIDESIDNEVIVDISSESEDDERHDSFEFDDKEKHREKRKGFDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEFSREEILGRNCRFLQGPETDPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDHKGEVQYFIGVQLDGSQHVEPLHNCIAEDSAKEGEQLVKKTAENVGEAVRELPDANQKPDDLWMNHSKVVRPKPHRKDDDAWRAIQKILENGEQIGLKHFRPIKPLGSGDTGSVHLVELEGTGQHFAMKAMDKGVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHVCLITDYYPGGELFMLLEREPTKVLKEDSVRFYAAEVVIALEYLHCQGIIYRDLKPENVLIQSNGHVSLTDFDLSCLTSCKPQLIIPATEEKNKRKKNKKRQEKSQQVPMFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGVLLYEMLYGYTPFRGKTRQKTFANILHKDLKFPKSKPVSPHAKQLIYWLLHRDPKNRLGSLKGANEIKCHPFFRNINWALIRDTKPPELDAPISPENDEEIDPGLEDLQKNVF 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02541 896 TIGRFAM sensory_box: PAS domain S-box protein 386 476 IPR000014 -
Car01g02541 896 TIGRFAM sensory_box: PAS domain S-box protein 103 197 IPR000014 -
Car01g02541 896 SMART pac_2 153 195 IPR001610 -
Car01g02541 896 SMART pac_2 438 480 IPR001610 -
Car01g02541 896 ProSiteProfiles Protein kinase domain profile. 562 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02541 896 SMART pas_2 363 432 IPR000014 -
Car01g02541 896 SMART pas_2 78 147 IPR000014 -
Car01g02541 896 CDD PAS 103 192 IPR000014 -
Car01g02541 896 SUPERFAMILY PYP-like sensor domain (PAS domain) 377 476 IPR035965 -
Car01g02541 896 Pfam Protein kinase domain 564 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02541 896 MobiDBLite consensus disorder prediction 267 288 - -
Car01g02541 896 ProSiteProfiles PAS repeat profile. 365 434 IPR000014 -
Car01g02541 896 MobiDBLite consensus disorder prediction 31 72 - -
Car01g02541 896 CDD PAS 376 476 IPR000014 -
Car01g02541 896 ProSitePatterns Serine/Threonine protein kinases active-site signature. 683 695 IPR008271 GO:0004672|GO:0006468
Car01g02541 896 ProSiteProfiles PAC domain profile. 435 489 IPR000700 -
Car01g02541 896 ProSitePatterns Protein kinases ATP-binding region signature. 568 591 IPR017441 GO:0005524
Car01g02541 896 Gene3D PAS domain 90 244 - -
Car01g02541 896 Coils Coil 257 277 - -
Car01g02541 896 Pfam PAS domain 384 476 IPR000014 -
Car01g02541 896 Pfam PAS domain 97 192 IPR000014 -
Car01g02541 896 SMART serkin_6 562 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02541 896 CDD STKc_phototropin_like 560 880 - -
Car01g02541 896 SUPERFAMILY PYP-like sensor domain (PAS domain) 97 189 IPR035965 -
Car01g02541 896 SUPERFAMILY Protein kinase-like (PK-like) 548 872 IPR011009 -
Car01g02541 896 PANTHER PHOTOTROPIN-1 39 896 - -
Car01g02541 896 Gene3D Phosphorylase Kinase; domain 1 561 881 - -
Car01g02541 896 MobiDBLite consensus disorder prediction 49 64 - -
Car01g02541 896 MobiDBLite consensus disorder prediction 872 896 - -
Car01g02541 896 MobiDBLite consensus disorder prediction 243 262 - -
Car01g02541 896 ProSiteProfiles PAS repeat profile. 76 147 IPR000014 -
Car01g02541 896 PANTHER FLIPPASE KINASE 1-RELATED 39 896 - -
Car01g02541 896 Gene3D Transferase(Phosphotransferase) domain 1 646 879 - -
Car01g02541 896 Gene3D PAS domain 349 514 - -
Car01g02541 896 ProSiteProfiles PAC domain profile. 150 204 IPR000700 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02541 Car-Chr1 51127499 51138651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02541 9 896 AGC Kinase Gene Family AT3G45780 72.757 0.0 1294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Car01g02541 Pkinase 1.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02541 K20715 - gmx:100817565 1435.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02541 01 51127499 51138651 Car01g02541 01 51127499 51138651 ECH
Car01g02541 01 51127499 51138651 Car06g03537 06 66473992 66485845 PCT