Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02538 ATGAGTTGTTTTAGTTGTGTTGGAAAATCACGCCGAAAGATTGATACCAAAAACTCTATCCATACAGAGAAGCTTAGTGATTTCACTTCAGCTGATAAGGTCAAAGTTGATTTGAATGTGAATGATAAAAGTGAAGATGTTTCAAAACATGATCAACTTTCCCTTGACGTGAAGAACTTGAATTTAAATTTAAAAGATGGTGTTTCCAAGGATGGAAAAGTTGCAAAGACATTTACTTTTGAGGAGCTTGCAGCTGCAACAGGAAATTTTAGGGCAAATTGCTTTGTTGGTGAAGGAGGGTTTGGCAAGGTTTATAAAGGGTATATAGAGAAATTAAATCAGGTTGTTGCAATTAAGCAACTTGACCCTAATGGACTTCAAGGAATTAGGGAATTTGTTGTTGAAGTGTTGACACTTAGTTTGGCTGAACACCCAAATCTTgtcaagttaattgggttttgtgccgagggagagcaaaggctattggtgtatgagtatatgccaTTGGGATCTTTGGAGAATCATTTGCATGATCTTTCGCCTGGTAAAAAACCGATTGATTGGAATACAAGAATGAGAATAGCTTCTGGTGCAGCTAGAGGTTTGGAGTATTTGCACGACAAAATGAAGCCTCCTGTCATATACCGTGACCTCAAATGCTCCAACATTTTGTTAGGCGCCGATTATCATGCCAAGTTATCTGATTTCGGCTTGGCAAAAGTAGGTCCTAGCGGCGATAAGACTCATGTTTCAACAAGAGTTATGGGCACATATGGGTACTGTGCTCCAGATTATGCAATGACAGGTCAATTGACATTTAAGTCGGACATTTATAGCTTTGGTGTTGTTCTTTTGGAGCTCATCACAGGCAGAAAGGCGATCGACCAGAGAAAACCTGCTAAAGAACAAAATCTAGTCGCTTGGGTATGTCTATTTTCTGTTTTCTTAACTCTGTTGCTGGAAATCATATCTGTTGATTACCTTATGCATGTATGTTTGCTTTCAGGCAAGGCCATTATTCAGAGATCGACGAAGATTCTCGGAGATGGTAGATCCATTGCTTGA 1065 0.3671 MSCFSCVGKSRRKIDTKNSIHTEKLSDFTSADKVKVDLNVNDKSEDVSKHDQLSLDVKNLNLNLKDGVSKDGKVAKTFTFEELAAATGNFRANCFVGEGGFGKVYKGYIEKLNQVVAIKQLDPNGLQGIREFVVEVLTLSLAEHPNLVKLIGFCAEGEQRLLVYEYMPLGSLENHLHDLSPGKKPIDWNTRMRIASGAARGLEYLHDKMKPPVIYRDLKCSNILLGADYHAKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDQRKPAKEQNLVAWVCLFSVFLTLLLEIISVDYLMHVCLLSGKAIIQRSTKILGDGRSIA 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02538 354 Pfam Protein kinase domain 96 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02538 354 Gene3D Phosphorylase Kinase; domain 1 62 166 - -
Car01g02538 354 ProSitePatterns Protein kinases ATP-binding region signature. 96 119 IPR017441 GO:0005524
Car01g02538 354 ProSiteProfiles Protein kinase domain profile. 90 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02538 354 SMART serkin_6 90 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02538 354 PANTHER OS07G0668900 PROTEIN 1 309 - -
Car01g02538 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Car01g02538 354 Gene3D Transferase(Phosphotransferase) domain 1 167 327 - -
Car01g02538 354 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 309 - -
Car01g02538 354 SUPERFAMILY Protein kinase-like (PK-like) 76 320 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02538 Car-Chr1 51112300 51115077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02538 1 309 Glycoside Hydrolase AT3G07070 58.065 2.26e-123 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Car01g02538 Pkinase 1.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02538 - - gmx:100794680 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02538 01 51112300 51115077 Car01g02538 01 51112300 51115077 ECH
Car04g01809 04 19117355 19127666 Car01g02538 01 51112300 51115077 ECH