Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02533 ATGGTATCTCACGGTATCAAGTTTGTCTTTTGGCGTTTTGTTTTGGCCGTTGTGGTTATTGTAATTTTCACTCCAAAGTTTAGTTCCGCCAAACAATCTAAGTTAGTGGGCTTGAAAATGAATATGATTGATCGATGTTGGAGACCGAATCCTGAATGGAGGAGGTATCGACAACAACTAGCTTTTTGCTCTATTGGCTATGTTGGAAAAATGATAAACAATGTTGGTAATGATCTCATACATTATAAAGTTATTGACTCAAATGATGATCCTATAAACCCCAAACCAGGTACGTTGAGGTACGGAGCTTCTGTTATTCAAGGTAAAGTGTGGATCACATTCCAAAAAGACATGAACATTAAACTCATGAAACCTCTTCTCATTAGTAGTTTTACCACCATTGATGGTCGAGGTGCTACCGTTCACATTGCTGATAATGCATGCTTGATGATATATAAGACCACCAACATAATTATTCACAATATTCGAATTCACCACTGCAAAGCTCAAGCCCCAGGGATGGTGATGGGGCCTAATGGAAAGGTAATTTCTTTGGGCCAAGTAGATGGAGATGCAATAAGATTGGTTACCGCTTCAAAAATTTGGATTGATCATAATACACTTTATAGTTGTGAAGATGGTCTTCTTGATGTTACACGAGGTTCTACTGATGTGACAATATCAAATAATTGGTTTAGAGAACAAGATAAGGTTATGCTTCTTGGACACGATGATGGGTATGTAAGAGACAAAAACATGAAAGTTACTGTTGTATACAATCATTTTGGACCTAATTGCAACCAACGAATGCCAAGGATTCGTCATGGATATGCACATGTAGCCAATAATCTTTATTTGGGGTGGATGCAATATGCAATCGGTGGAAGCATGGGACCTAGCCTTAAGAGTGAAGCTAACCTTTTCATAGCACCAAAGGTTGGGAGTAAGGAGGTAACATGGAGAAAAGATGGTTATAAAAATGTAGATAAGTGGGAGTTTTATTCAGTAAGAGATGCTTTCGAAAATGGGGCCTCTTTTGTGGTAACAAAAGGAGGAAGTGTGCCAAAACCGAATTATAACAAAGAACAAGGATTTAAAGTTGTTGACGTCAAATCTGTTAGATCATTGACAAGATCATCAGGCGCATTTCGATGTAGTAGAACCTCTATATGTTAA 1176 0.3793 MVSHGIKFVFWRFVLAVVVIVIFTPKFSSAKQSKLVGLKMNMIDRCWRPNPEWRRYRQQLAFCSIGYVGKMINNVGNDLIHYKVIDSNDDPINPKPGTLRYGASVIQGKVWITFQKDMNIKLMKPLLISSFTTIDGRGATVHIADNACLMIYKTTNIIIHNIRIHHCKAQAPGMVMGPNGKVISLGQVDGDAIRLVTASKIWIDHNTLYSCEDGLLDVTRGSTDVTISNNWFREQDKVMLLGHDDGYVRDKNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWMQYAIGGSMGPSLKSEANLFIAPKVGSKEVTWRKDGYKNVDKWEFYSVRDAFENGASFVVTKGGSVPKPNYNKEQGFKVVDVKSVRSLTRSSGAFRCSRTSIC 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02533 391 Gene3D - 40 384 IPR012334 -
Car01g02533 391 SUPERFAMILY Pectin lyase-like 38 381 IPR011050 -
Car01g02533 391 SMART amb_all 117 314 IPR002022 -
Car01g02533 391 Pfam Pectate lyase 127 308 IPR002022 -
Car01g02533 391 PANTHER PECTATE LYASE 2 388 - -
Car01g02533 391 PRINTS Pollen allergen Amb family signature 63 80 IPR018082 -
Car01g02533 391 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Car01g02533 391 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Car01g02533 391 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Car01g02533 391 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Car01g02533 391 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Car01g02533 391 PRINTS Pollen allergen Amb family signature 362 385 IPR018082 -
Car01g02533 391 PANTHER PECTATE LYASE 18-RELATED 2 388 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02533 Car-Chr1 51077680 51079624 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02533 71 318 Polysaccharide Lyase AT5G09280 72.177 9.44e-142 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02533 K01728 - gmx:100780437 669.463