Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02530 ATGGGAAGAGCTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGACCATGGTCACCAGAAGAAGATTCAAAGCTCAAAGAGTATATACAAAATCATGGAACTGGTGGAAATTGGATTGCTCTTCCTCAAAAAGCTGGTCTAAGGAGGTGTGGAAAAAGTTGTAGATTGAGATGGCTTAATTATCTTAGGCCAAACATTAAGCATGGAGAATTCTCTGATGAAGAAGACAGAATCATTTGCACTCTTTATGCTAATATTGGAAGCAGGTGGTCAATCATAGCTGCTCAATTACCTGGAAGAACTGATAATGATATAAAAAACTATTGGAACACAAAACTAAAGAAAAAACTAATGAATTTTCTTCCACAATCTCACAACACAATCTTACCTTATGAAACATGTTCTCAAAACACACCATTTTCAAATTCTCATTCATATTACAACAACTATCAAACACCAACAAACACATCTTTTGTTGAACAAATTTCAGTTCCTAATTCAACAATCTCTGAACCTTTTTACCAAGAAGATCATTCCTTGCAATATAGTAATTATCCATCACTACCTATCACAACAGAAAGTCTTGTCATGTTTGGAAGTGAGGGAAGTTGTTGCAGTTCTTCTGATGGAATAAGCTCTAGTCTTGTGAAACAAGATGATATTATCAAGTTTCAGAATTTCATGCAAACcaacaacaacaacaacaatatcatcaaTCATGTTGGTTTTAACCAATGGGAAAAGGTGAACTTTTGCTTTAGTCAAAATCAAAAGCAAATTAGTACAACTTTGGATTATGATCTTGAGTATATTAAGCAATTAATTAGTAGTAATAGTAATAACTTGATGAGTGTTGATGAAAACAAGAGAGAGGAGAAGAGTATGTACTACTACTAG 897 0.3289 MGRAPCCDKANVKKGPWSPEEDSKLKEYIQNHGTGGNWIALPQKAGLRRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICTLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMNFLPQSHNTILPYETCSQNTPFSNSHSYYNNYQTPTNTSFVEQISVPNSTISEPFYQEDHSLQYSNYPSLPITTESLVMFGSEGSCCSSSDGISSSLVKQDDIIKFQNFMQTNNNNNNIINHVGFNQWEKVNFCFSQNQKQISTTLDYDLEYIKQLISSNSNNLMSVDENKREEKSMYYY 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02530 298 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Car01g02530 298 Gene3D - 69 136 - -
Car01g02530 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Car01g02530 298 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Car01g02530 298 Gene3D - 7 68 - -
Car01g02530 298 CDD SANT 16 62 IPR001005 -
Car01g02530 298 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Car01g02530 298 PANTHER TRANSCRIPTION FACTOR RAX3 1 282 - -
Car01g02530 298 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Car01g02530 298 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Car01g02530 298 PANTHER OS09G0431300 PROTEIN 1 282 - -
Car01g02530 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Car01g02530 298 CDD SANT 70 113 IPR001005 -
Car01g02530 298 SMART sant 67 115 IPR001005 -
Car01g02530 298 SMART sant 13 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02530 Car-Chr1 51055639 51057380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02530 1 119 MYB Transcription Factor Family AT5G65790 89.076 6.46e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car01g02530 Myb_DNA-binding 2.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02530 K09422 - gmx:100808114 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02530 01 51055639 51057380 Car01g02530 01 51055639 51057380 ECH
Car01g02530 01 51055639 51057380 Car06g03441 06 64604873 64606692 PCT