Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02527 ATGAGAATCTGGAACCATAAAGATTCTACTCTCTTCTCTTTGCATCACCTCTTCACTAGATCTATCTTCTTCTTCTTCCCGATTCCAGCCAGCAAGAAAAAGGCCGCGCAGAAGAAAGCCGCCGCCGCAGCAAAAAGAGGAGGCAAGTCAGTTGCCGCCGCGGCTTCATCGAAAACGGCGTCGGAGAACGCGGCAGACACTGTCGCAAATGGAATTGGGGATATTCAGATATCCGATCGTACCTGCACCGGTGTCTTGTGTTCTCATCCTCTTTCCAGAGATATTCGGATAGAATCTCTATCAGTTACTTTCCACGGACATGATCTCATAGTTGATTCTGAATTGGAGCTGAATTATGGAAGACGTTATGGTTTGCTTGGATTAAATGGTTGTGGAAAATCTACCCTACTTACGGCAATTGGTTGCCGTGAGCTTCCTATTCCAGATCACATGGATATTTATCACCTTAGCCGGGAAATTGAAGCCTCTGACATGTCTGCATTGGAGGCTGTCATTAGCTGTGACGAGGAAAGGTTGAGGTTGGAGAAAGAAGCTGAAATTCTCGGAGCACAAGATGATGGCGGTGGTGAAGCACTTGAACGGGTTTATGAACGATTGGAAGCTATGGATGCTTCTACTGCAGAAAAGCGTGCTGCTGAAATTTTATTTGGTCTTGGTTTCAACAAGCAGATGCAGGCAAAGAAGACGAGCGATTTTTCTGGTGGATGGAGAATGAGGATTGCTTTAGCACGAGCCCTATTTATGAACCCAACCATTCTTCTACTTGATGAACCAACCAATCACCTTGATTTGGAAGCATGTGTGTGGCTGGAGGAGAATTTGAAGAAGTTTGACCGTATTCTGGTTGTGGTTTCACACTCCCAGGATTTCCTTAATGGTGTCTGCACAAATATAATCCACATGCAAAACAAAAAGCTGAAGCTCTATACTGGTAATTATGATCAATATGTTCAAACCCGTGCTGAACTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAGGAGCAGATCGCCTCAATGAAGGAATACATTGCACGATTTGGCCATGGATCTGCAAAACTAGCTCGCCAAGCTCAGAGTAAAGAGAAGACACTTGCAAAAATGGAGCGCGGTGGACTTACAGAGAAGGTGGTAAGAGACAAAATTTTAGTTTTCCGCTTTGTTGATGTCGGGAAACTTCCCCCACCTGTCCTCCAGTTTGTGGAGGTGACATTTGGCTACACTCCTGATAATCTCATCTACAAGAACCTCGACTTTGGCGTCGATTTAGACTCCAGGATTGCTTTGGTTGGACCAAACGGAGCTGGCAAGAGCACGTTACTGAAGCTTATTACAGGTGATTTGGTTCCTTTAGATGGCATGGTTCGTCGCCATAATCACCTTCGCATTGCACAATTTCACCAGCATTTGACTGAAAAGCTCGACTTGGAACTTTCTGCCCTCCAATTTATGATAAAAGAGTACCCTGGAAATGAGGAAGAGAGGATGAGAGCAGCTATTGGAAAGTTTGGATTGTCGGGTAAAGCGCAGGTGATGCCTATGAAAAATTTATCAGACGGACAGAGGAGTCGGGTGATCTTCGCATGGTTAGCCTATAGACAGCCTCACTTGCTACTATTAGATGAGCCAACTAATCATTTAGATATCGAAACAATCGACTCATTAGCCGAGGCATTGAATGAATGGGATGGTGGCATGGTGCTTGTTAGTCATGATTTTAGGCTCATAAATCAGGTGGCTCATGAGATATGGGTATGTGCTGATCAAACAGTGACCAAATGGGAGGGTGACATTATGGATTTCAAGCAGCATCTAAAGGCAAAAGCTGGTTTAGCTGACTGA 1866 0.448 MRIWNHKDSTLFSLHHLFTRSIFFFFPIPASKKKAAQKKAAAAAKRGGKSVAAAASSKTASENAADTVANGIGDIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLSREIEASDMSALEAVISCDEERLRLEKEAEILGAQDDGGGEALERVYERLEAMDASTAEKRAAEILFGLGFNKQMQAKKTSDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVVSHSQDFLNGVCTNIIHMQNKKLKLYTGNYDQYVQTRAELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKILVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRIALVGPNGAGKSTLLKLITGDLVPLDGMVRRHNHLRIAQFHQHLTEKLDLELSALQFMIKEYPGNEEERMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQTVTKWEGDIMDFKQHLKAKAGLAD 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02527 621 Gene3D - 95 359 IPR027417 -
Car01g02527 621 ProSitePatterns ABC transporters family signature. 239 253 IPR017871 GO:0005524
Car01g02527 621 Gene3D - 382 619 IPR027417 -
Car01g02527 621 Pfam ABC transporter 113 267 IPR003439 GO:0005524
Car01g02527 621 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 406 621 IPR003439 GO:0005524
Car01g02527 621 CDD ABCF_EF-3 95 312 - -
Car01g02527 621 PANTHER - 29 621 - -
Car01g02527 621 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 29 621 - -
Car01g02527 621 Pfam ABC transporter 422 553 IPR003439 GO:0005524
Car01g02527 621 SMART AAA_5 119 321 IPR003593 -
Car01g02527 621 SMART AAA_5 431 617 IPR003593 -
Car01g02527 621 CDD ABCF_EF-3 406 598 - -
Car01g02527 621 Coils Coil 313 333 - -
Car01g02527 621 Pfam ABC transporter 306 378 IPR032781 -
Car01g02527 621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 389 600 IPR027417 -
Car01g02527 621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 339 IPR027417 -
Car01g02527 621 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 95 335 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02527 Car-Chr1 51015679 51020393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02527 406 601 Calmodulin-binding Proteins AT2G36910 26.522 7.96e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02527 K06185 - gmx:100785099 1072.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02527 01 51015679 51020393 Car01g02527 01 51015679 51020393 ECH
Car01g02527 01 51015679 51020393 Car06g03444 06 64650132 64654275 PCT