Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02514 ATGCCTTGTGAACATGTCATTGCAGCTCTAGCATATTTGAATGAAATGCTCGAGAATCATGTGCATAAGTGGCTGACAATGGATTCATTGAAAGCTACTTATGAGCACTACATTTGGTCTATCAACAACCAAGAATATTGGGTTATTGCTTACCACCCAAAATCAGAGCCAACAAAGCTAGAAAGACTGATTGGGAGACCAAAGAAGTGTTCACCAATTGGAGTTTCCATAGACAACAGAAGATTAGCTTTGGCTGCAATTGGAAAACTAATTTTTGCTCAAATGTCTGAGTTAGTTAATGATTTCTACAACAATGGTTTACCTTCAAATCTCTCTGGTGGTAAATGTCCAAGCTTGGATTATGGACTAAAAGGCGGCTAG 381 0.3858 MPCEHVIAALAYLNEMLENHVHKWLTMDSLKATYEHYIWSINNQEYWVIAYHPKSEPTKLERLIGRPKKCSPIGVSIDNRRLALAAIGKLIFAQMSELVNDFYNNGLPSNLSGGKCPSLDYGLKGG 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02514 126 PANTHER HISTIDINE AMMONIA-LYASE 67 125 IPR001106 -
Car01g02514 126 Gene3D Fumarase/aspartase (Central domain) 69 126 - -
Car01g02514 126 SUPERFAMILY L-aspartase-like 71 125 IPR008948 GO:0003824
Car01g02514 126 Pfam Aromatic amino acid lyase 71 125 IPR001106 -
Car01g02514 126 PANTHER PHENYLALANINE AMMONIA-LYASE 67 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02514 Car-Chr1 50861653 50862692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02514 4 126 Monolignol Biosynthesis Gene Families AT5G04230 41.096 2.02e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02514 K10775 - han:110898343 100.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02514 01 50861653 50862692 Car01g02514 01 50861653 50862692 ECH