Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02505 ATGTCTGACCCTGAGGATAATTCTAATAAGAAGGAGTCTTGGTTTTTCGACAACGATTTTAATGGTCTGCCGGATGATATTGTTTTCGATGATGTCCTTAAGTTTTTAGATTTACCATTGGAAGATGTTGACCCTAATGGTGCTGAAGAAGACTGGAGTGTTCAATTTCAAAGCCTAGGAGAGCCATGTTTTGATGCTTTTTCAGTGTCATCAGCAGGGCTGCATGGCGAAAGCAAAATCCGAAATGAAATTCCTCGAACTGGGAAAAGCTTATCTGCTCCTTATAATGAGATTCCCCTAATCAAACAAGTGGCGAAGATTGCTGGACCAACCTATGGAAAAACTATTCCCAACCAGAATGTTCCTTTCTATGAAAAAAAAGATTTGCATCAATACCGAAGCTACAGCCCGGTATCTGTTTTTGAAGGCAGCAGCACTTCCTCGGCTGAGACTTCCAGCTTTGATCTGCCTGTCATCCCAGTTAAGCGGGCTCGAAGTAAACGCCGGCGTCCTTCAATCTTAAATCCTGTATTCTCAATTTCGTTCATCCCTCCTAACTCACTGGCTTTGCAAAAATATCATAAGACACCGACCTCTGAGTCAGATTCAAACAAAGCAAAGAAACCGAGAAAAAGAGACCTATCCGTGCTCTCAGGTGATGTCGAGACATCCTCATCACAAGACTCAGTTGTCACTAGAAAATGCTCGCATTGCGAGATCACAAAGACTCCGCAATGGAGAGAGGGACCCAAAGGTCCCAAAACGCTGTGCAATGCTTGTGGCGTTCGGTACAGGTCTGGCCGCCTCTACCCTGAATACCGTCCAGCAGCCAGCCCTACTTTTGTAGAATCAATTCACTCAAACTGTCACAAGAAAGTTATGGAGATGAGATGCAAAGTCATCAAAGAATGTGTTAGGGCCCCTTCTAGGTTGGCCACATAA 942 0.4427 MSDPEDNSNKKESWFFDNDFNGLPDDIVFDDVLKFLDLPLEDVDPNGAEEDWSVQFQSLGEPCFDAFSVSSAGLHGESKIRNEIPRTGKSLSAPYNEIPLIKQVAKIAGPTYGKTIPNQNVPFYEKKDLHQYRSYSPVSVFEGSSTSSAETSSFDLPVIPVKRARSKRRRPSILNPVFSISFIPPNSLALQKYHKTPTSESDSNKAKKPRKRDLSVLSGDVETSSSQDSVVTRKCSHCEITKTPQWREGPKGPKTLCNACGVRYRSGRLYPEYRPAASPTFVESIHSNCHKKVMEMRCKVIKECVRAPSRLAT 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02505 313 CDD ZnF_GATA 234 281 IPR000679 GO:0006355|GO:0043565
Car01g02505 313 ProSiteProfiles GATA-type zinc finger domain profile. 233 265 IPR000679 GO:0006355|GO:0043565
Car01g02505 313 ProSitePatterns GATA-type zinc finger domain. 235 260 IPR000679 GO:0006355|GO:0043565
Car01g02505 313 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 231 289 - -
Car01g02505 313 Pfam GATA zinc finger 235 268 IPR000679 GO:0006355|GO:0043565
Car01g02505 313 MobiDBLite consensus disorder prediction 193 225 - -
Car01g02505 313 MobiDBLite consensus disorder prediction 198 217 - -
Car01g02505 313 SMART GATA_3 229 279 IPR000679 GO:0006355|GO:0043565
Car01g02505 313 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 74 299 - -
Car01g02505 313 Gene3D - 229 279 IPR013088 GO:0006355|GO:0008270
Car01g02505 313 PANTHER GATA TRANSCRIPTION FACTOR 74 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02505 Car-Chr1 50763326 50768653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02505 17 299 C2C2-Gata Transcription Factor Family AT1G08010 41.077 1.22e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Car01g02505 GATA 4.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02505 - - gmx:100778675 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02505 01 50763326 50768653 Car01g02505 01 50763326 50768653 ECH
Car06g03472 06 65221283 65224841 Car01g02505 01 50763326 50768653 ECH
Car01g02505 01 50763326 50768653 Car06g03472 06 65221283 65224841 PCT