Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02504 ATGAAGGAAGCTGAGAAAAGCTTAGATCCACAACTATGGCACGCATGTGCTGGAGGAATGGTTCAAATGCCATCAGTGAACTCAAAAGTTTTCTACTTTCCTCAAGGTCATGCAGAACATGCTCAAACCAACGTTGATTTTGGAGCCTCTTTTCGAATTCCACCATTAATCCTCTGTCGTGTAGCTTCTGTGAAATTTTTAGCCGACCCAGAAACAGATGAAGTATTTTCAAAGATGACTTTGATTCCCTTAAGAAGTTCAGAGCTTGAAAATGAAGATTTTGATGGTGTTGATGGTAATGCTTCTGAGAATTCAGAAAAGCCTGCATCTTTTGCTAAGACTTTGACACAATCTGATGCAAACAATGGTGGTGGGTTTTCTGTTCCGAGATACTGTGCAGAAACGATTTTTCCTCGGCTTGATTACTCGGCAGAGCCGCCTGTTCAAACGGTGATTGCTAAGGATGTTCATGGCGAGGTTTGGAAGTTTAGACATATCTATAGAGGAACACCAAGGAGGCATTTGTTAACAACTGGTTGGAGTAGTTTTGTAAACCAGAAGAAGCTTGTTGCAGGTGATTCTATTGTGTTTCTGAGAGGTGAAAATGGTGAACTTTGTGTTGGGATTCGTCGCGCTAAGAGAGGGATTGTTGGTGGTTTGGAAACACCTTCTGGATGGAGTTCTGTGAATGGAAGTTGTGGTTTTGGAGTTGGAGGTTATGGTGCTTTTTTGAGAGAGGATAATAAGTTGTTGAGAAATGGATGTGGGAATTTGAGTCCTAATGGTGGGGGTGTAGGTGGTAATTTAGGGGGTGGAAGAGTTAAAGTGAGTGGTGAATCTGTGAGGGAAGCTATGAGACTTGGTGGTAGTAATCAACCATTTGAGGTTGTTTATTATCCAAGAGCAAGTACTCCTGAGTTTTGTGTTAAGACTTCAGCTGTGAAAGCTGCTATGAGAATTCAATGGTGTTCTGGTATGAGGTTTAAAATGCCATTTGAAACTGAGGATTCTTCTAGGATTAGTTGGTTCATGGGAACTATTTCTTCTGTTCATGTTGTTGATCCTATCCGTTGGCCTAATTCCCCTTGGAGACTTCTTCAGGTTACATGGGACGAACCGGATTTGCTACACAATGTGAAGCGTGTGAGTCCATGGTTGGTTGAGTTAGTATCAAACATGTCAGTGATTCATCTCACGCCGTTCTCGCCACCGCCAAGGAAGAAATTTCGTTTTCCACCACATCCCGATTTCCCTCTCGATGTTCAATTTCCGATACCGACTTTTTCAGGCAACCCGTTCGGGACTAATAACCCTTTGTGTTGTTTATCAGATAATAATAACAATGCTCCTGCAAGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTCTCTCAGATTTTCACCTTAACAACAACAAACTTGAGTTAGGAGTGTTTAATCCAAACCATAATGAGATGATGATGATTTCTAATGGCAGCAACATAGTAAAAAACAACAATCATGATAAGAAGAACAAAGAAAGTTTATCATGTTTGTTAACCATAGGAAACAATTCTCACAAGAGTTTGGAAAAATCAGataataataataatagtagtagtagtaatgttaatGTTAAGAGACACCAATTTTTGCTTTTTGGTCAACCAATACTCACTGAGCAACAAATCTCAAGAAAATGTTGTAGCAATGAGAATAAGGAGAAAGAAAAGTGGTTTTTGAGTGACACAAAATCTTCTGAACAGTTTTCATCACCAGGTAAATCATCTACTGTTACTAGTGGTGATGAGGTTTGTTGGAAACAACAAGTTGGAATATTAGATAGTGGTCATTGCAAGGTATTCTTGGAGTCAGAAGATGTTGGAAGAACAATAGATTTGTCACGTGTTGGTTCTTATGAAGAACTGTATACAAAACTGGCAAACATGTTTGGAATAGAAAGGTTGAGTCATGTACTATACCGTGATGCAACAGGTGCTGTTAAACAAACTGGTGAAGAACCCTTCAGTGATTTCATGAAGACAGCAAAAAGATTGACAATTCTGATGGATTCAGGCAGCAAAGATACTAGAAGGGTGTGTATCACAGGAACTAGGAATGCTGAACGTGGATTAGATGCATCAAATAAGAGAGGACCTCTGAGCATATTTGCATGA 2160 0.3954 MKEAEKSLDPQLWHACAGGMVQMPSVNSKVFYFPQGHAEHAQTNVDFGASFRIPPLILCRVASVKFLADPETDEVFSKMTLIPLRSSELENEDFDGVDGNASENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRGENGELCVGIRRAKRGIVGGLETPSGWSSVNGSCGFGVGGYGAFLREDNKLLRNGCGNLSPNGGGVGGNLGGGRVKVSGESVREAMRLGGSNQPFEVVYYPRASTPEFCVKTSAVKAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVHVVDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNMSVIHLTPFSPPPRKKFRFPPHPDFPLDVQFPIPTFSGNPFGTNNPLCCLSDNNNNAPASIQGARHAQIGISLSDFHLNNNKLELGVFNPNHNEMMMISNGSNIVKNNNHDKKNKESLSCLLTIGNNSHKSLEKSDNNNNSSSSNVNVKRHQFLLFGQPILTEQQISRKCCSNENKEKEKWFLSDTKSSEQFSSPGKSSTVTSGDEVCWKQQVGILDSGHCKVFLESEDVGRTIDLSRVGSYEELYTKLANMFGIERLSHVLYRDATGAVKQTGEEPFSDFMKTAKRLTILMDSGSKDTRRVCITGTRNAERGLDASNKRGPLSIFA 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02504 719 Gene3D - 322 396 - -
Car01g02504 719 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Car01g02504 719 PANTHER AUXIN RESPONSE FACTOR 2 696 - -
Car01g02504 719 Gene3D - 609 691 - -
Car01g02504 719 SUPERFAMILY DNA-binding pseudobarrel domain 105 212 IPR015300 -
Car01g02504 719 Gene3D - 109 213 IPR015300 -
Car01g02504 719 Pfam Auxin response factor 289 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car01g02504 719 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Car01g02504 719 CDD B3_DNA 110 211 IPR003340 GO:0003677
Car01g02504 719 SMART B3_2 111 213 IPR003340 GO:0003677
Car01g02504 719 ProSiteProfiles PB1 domain profile. 610 687 IPR000270 GO:0005515
Car01g02504 719 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 696 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02504 Car-Chr1 50745831 50749544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02504 3 693 B3 DNA Binding Superfamily AT2G28350 57.282 0.0 736
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Car01g02504 B3 1.7e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02504 - - mtr:MTR_2g094570 1096.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02504 01 50745831 50749544 Car01g02504 01 50745831 50749544 ECH
Car06g03473 06 65262709 65267058 Car01g02504 01 50745831 50749544 ECH
Car04g01863 04 20016320 20019820 Car01g02504 01 50745831 50749544 ECH
Car01g02504 01 50745831 50749544 Car06g03473 06 65262709 65267058 PCT