Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02502 ATGGCTATGGCTGTTGCTCAACAACATAGAGATAATAGCATTGAGAGACACCTTGATTCTTCTGGCAAATATGTGCGTTACACTGCTGAACAGATTGAAGCTTTGGAAAAGGTTTATGTGGAGTGTCCTAAGCCTAGTTCCATGAGAAGGCAACAATTGATTCGAGAGTGTCCTGTACTTTCAAACATTGAACCTAAGCAAATCAAGGTTTGGTTTCAAAATAGAAGGTGTAGAGAGAAGCAGAGAAAAGAAGCTTCTCAGCTTCAGAGTGTGAATAGGAAACTTTCCGCGATGAACAAGCTGTTGATGGAGGAAAATGAGAGGTTGCAGAAACAGGTTTCTCAGTTGGTGAATGAGAACGGGTTTATGCGGCAGCAATTGCGCGCTATCCCGGCAGCCGCAAATGCTGATGGTAGTAGTGGTGATTCCGCAGCTGCTCCTCCTTTGAATTCCATGAGAGATGCTAATAGCCCCGCTGGATTACTATCAATTGCTGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACTGGAACTGCTGTCGATTGGGTCCAGATTCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACAAAGTTGCGACGGAGTGGCAGCTCGAGCCTGTGGTCTTATTAGTTTGGAACCTACAAAGATTGTGGAGATCCTAAAAGATCGCCCATCTTGGTTTCGGGATTGTCGGAGTTCAGAAGTTTTCACTATGTTCCCTGCTGGAAATGGAGGGACAATTGAACTTGTTTACACACAGATGTATGCTCCAATGACACTGGCTTCTGCACGGGATTTCTGGACTCTAAGATACACTACAAGTTTGGAGAATGGCAGTGTTGTGGTTTGTGAAAGGTCACTGTCTGGTTCTGGTGCTGGGCCTAATGCTGCCGCGGCATCACAGTTTGCGAGGGCGGAAATGCTCCCTAGTGGCTACTTGATTCGACCATGCGAAGGTGGAGGGTCAATCATTCACATTGTAGACCACCTTAACCTACAGGCATGGAGTGTGCCAGAAGTGCTGCGACCACTCTATGAATCATCGAAAATGGTAGCTCAAAGAATGACAATTGCAGCACTTCGCTATATCAGGCAAATAGCTCAAGAAACAAGTGGTGAAGTGGTATATAGCGTGGGTAGGCAACCTGCCGTTCTGAGAACTTTTAGTCAACGGATGAGCAGAGGTTTCAATGACGCTGTCAATGGATTCAATGATGACGGCTGGTCTGTTTTGAACTGTGATGGTCTTGAGGATGTTACTATTGCAGTTAATTCAATCAAGAATTTGAGTGGCACTTCTAATCCAGCAAGTTCCCTTACACTTCTCGGAGGAATTGTCTGTGCAAAAGCTTCTATGTTACTCCAAAACATCACTCCTGCAGTTTTAGTTCGCTTTTTGAGGGAACATCGCTCGGAGTGGGCTGATTTTAGTGTCGATGCTTTTTCTGCTGCTTCGCTGAAAGCTGGCTCCTATGCTTATCCTGGATTGAGGCCTACGAGGTTCACTGGCAACCAAGCAATCATGCCTCTTGGACATTCAATTGAACATGAAGAGATGCTAGAAGTTATCCGCCTTGAAGGTCACTCTCTTGCTCAAGAAGATGCTTTTGTATCTAGGGATGTTCATCTCTTACAGCTGTGTAGTGGAATTGATGAGAATGCTGTGGGGGCTTGTTCTGAGCTCATATTTGCTCCAATTGATGACATGTTCCCCGACGATGTTCCATTGGTGCCTTCTGGTTTGCGCATTGTCCTGTTGAATTCACAAACAAGTGATAAAAAGAACGCAGTGACAACAAAACGGACCTTGGATTTGACGTCTGGTCTTGAAGTAGGCCCAACAACAACTCATGCTGCTGGAGACATGTCATTGTGTCCTAACAATCGATCAGTGTTGACTGTTGCCTTCCAGTTTCCTTTTGAGAACGGTCTGCAGGATAATGTTGCAGCCATGGCACGTCAGTATGTCCGCCGTGTAGTTTCCTCCGTGCAGGCAGTTGCCATGGCTATATCTCCGTCCAGTGTCAACCCTGCTGTTGGAGCAAAACTCTCCCCTGGCTCTCCAGAAGCCCTTACACTAGCTCAATGGATCTGTCAGAGCTATAGTCATTTTTTGGGGGCGGAATTACTGAGATCTGAATCTCTCATCGGTGACATGGTACTGAAACATCTGTGGCATCATCCTGATGCTATTTTATGCTGTTCTTTGAAGTCCGTGCCGGTATTCATTTTTGCAAACCAGGCTGGCCTTGACATGTTGGAAACGACTCTAGTGGCTTTACAAGACATCACATTGGATAAAATATTCGATGAGTCTGCGCGCAAGGCTTTGATTGCATATTTCGCCAAGTTAATGCAGCAGGGGTTTGCTTGTATGCCAGCTGGGATCTGCATGTCGACGATGGGGCGACATGCGTCATATGATCAAGCCATCGCGTGGAAAGTGCTTGCTGAAGATAACAGCAGTGTTCACTGCTTAGCTTTCTCTTTCATAAATTGGTCATTTATATGA 2532 0.4601 MAMAVAQQHRDNSIERHLDSSGKYVRYTAEQIEALEKVYVECPKPSSMRRQQLIRECPVLSNIEPKQIKVWFQNRRCREKQRKEASQLQSVNRKLSAMNKLLMEENERLQKQVSQLVNENGFMRQQLRAIPAAANADGSSGDSAAAPPLNSMRDANSPAGLLSIAEETLAEFLSKATGTAVDWVQIPGMKPGPDSVGIFAISQSCDGVAARACGLISLEPTKIVEILKDRPSWFRDCRSSEVFTMFPAGNGGTIELVYTQMYAPMTLASARDFWTLRYTTSLENGSVVVCERSLSGSGAGPNAAAASQFARAEMLPSGYLIRPCEGGGSIIHIVDHLNLQAWSVPEVLRPLYESSKMVAQRMTIAALRYIRQIAQETSGEVVYSVGRQPAVLRTFSQRMSRGFNDAVNGFNDDGWSVLNCDGLEDVTIAVNSIKNLSGTSNPASSLTLLGGIVCAKASMLLQNITPAVLVRFLREHRSEWADFSVDAFSAASLKAGSYAYPGLRPTRFTGNQAIMPLGHSIEHEEMLEVIRLEGHSLAQEDAFVSRDVHLLQLCSGIDENAVGACSELIFAPIDDMFPDDVPLVPSGLRIVLLNSQTSDKKNAVTTKRTLDLTSGLEVGPTTTHAAGDMSLCPNNRSVLTVAFQFPFENGLQDNVAAMARQYVRRVVSSVQAVAMAISPSSVNPAVGAKLSPGSPEALTLAQWICQSYSHFLGAELLRSESLIGDMVLKHLWHHPDAILCCSLKSVPVFIFANQAGLDMLETTLVALQDITLDKIFDESARKALIAYFAKLMQQGFACMPAGICMSTMGRHASYDQAIAWKVLAEDNSSVHCLAFSFINWSFI 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02502 843 Pfam START domain 164 371 IPR002913 GO:0008289
Car01g02502 843 MobiDBLite consensus disorder prediction 133 152 - -
Car01g02502 843 CDD bZIP 75 114 - -
Car01g02502 843 SUPERFAMILY Bet v1-like 163 375 - -
Car01g02502 843 CDD homeodomain 23 83 IPR001356 GO:0003677
Car01g02502 843 ProSiteProfiles 'Homeobox' domain profile. 18 82 IPR001356 GO:0003677
Car01g02502 843 Gene3D - 199 380 IPR023393 -
Car01g02502 843 SUPERFAMILY Homeodomain-like 20 87 IPR009057 -
Car01g02502 843 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 843 - -
Car01g02502 843 Gene3D - 17 90 - -
Car01g02502 843 SMART HOX_1 20 86 IPR001356 GO:0003677
Car01g02502 843 Coils Coil 88 126 - -
Car01g02502 843 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 843 IPR044830 GO:0003700
Car01g02502 843 ProSiteProfiles START domain profile. 154 382 IPR002913 GO:0008289
Car01g02502 843 Pfam MEKHLA domain 699 842 IPR013978 -
Car01g02502 843 SMART START_1 163 373 IPR002913 GO:0008289
Car01g02502 843 Pfam Homeodomain 23 81 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02502 Car-Chr1 50719996 50726872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02502 1 843 Homeobox Transcription Factor Family AT5G60690 76.851 0.0 1368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car01g02502 START 2.4e-44 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02502 K09338 - gmx:100804870 1382.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02502 01 50719996 50726872 Car01g02502 01 50719996 50726872 ECH
Car06g03480 06 65580241 65585863 Car01g02502 01 50719996 50726872 ECH