Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02497 ATGCCGCCAAAGTTTGACCCGTCACAAGTCGTCGACGTCTACGTCCGAGTCACCGGCGGGGAGGTCGGAGCAGCAAGTTCACTCGCTCCCAAGATCGGTCCACTAGGTCTCTCTCCAAAAAAGATCGGAGAAGACATCGCAAAAGAAACCGCAAAGGACTGGAAGGGTCTTAGAGTGACAGTCAAGCTCACCGTACAGAATCGTCAGGCGAAGGTAGCAGTTGTTCCATCGGCGGCCGCGCTTGTAATCAAGGCCTTGAAGGAACCCGAACGTGACCGCAAGAAGACCAAGAATATCAAACACAATGGAAACATATCACTCGATGATGTTATCGAGATTGCTAAGGTTATGAAGCCGAGATCGATGGCGAAGGAACTTTCCGGCACCGTTAAGGAGATTCTTGGTACTTGTGTTTCCGTTGGGTGTACTGTTGATGGTAAGGATCCTAAGGATCTGCAACAAGAAATCAACGATGGAGATGTTGAAATTCCTCTGAATTAA 501 0.491 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKVMKPRSMAKELSGTVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEIPLN 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02497 166 SUPERFAMILY Ribosomal protein L11, C-terminal domain 76 149 IPR036769 -
Car01g02497 166 SMART rl11c 13 145 IPR000911 GO:0003735|GO:0005840|GO:0006412
Car01g02497 166 PANTHER 60S RIBOSOMAL PROTEIN L12 1 165 IPR000911 GO:0003735|GO:0005840|GO:0006412
Car01g02497 166 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 87 IPR036796 -
Car01g02497 166 PANTHER 60S RIBOSOMAL PROTEIN L12-3-LIKE 1 165 - -
Car01g02497 166 Hamap 50S ribosomal protein L11 [rplK]. 9 146 IPR000911 GO:0003735|GO:0005840|GO:0006412
Car01g02497 166 Pfam Ribosomal protein L11, N-terminal domain 13 69 IPR020784 -
Car01g02497 166 MobiDBLite consensus disorder prediction 147 166 - -
Car01g02497 166 Gene3D - 1 81 IPR036796 -
Car01g02497 166 Gene3D - 82 164 IPR036769 -
Car01g02497 166 CDD Ribosomal_L11 13 144 IPR000911 GO:0003735|GO:0005840|GO:0006412
Car01g02497 166 Pfam Ribosomal protein L11, RNA binding domain 75 144 IPR020783 GO:0003735|GO:0005840|GO:0006412
Car01g02497 166 ProSitePatterns Ribosomal protein L11 signature. 131 146 IPR020785 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02497 Car-Chr1 50673884 50676032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02497 1 164 Cytoplasmic Ribosomal Protein Gene Family AT5G60670 91.463 3.65e-109 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02497 K02870 - cit:102627399 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02497 01 50673884 50676032 Car01g02497 01 50673884 50676032 ECH
Car06g03484 06 65698319 65699160 Car01g02497 01 50673884 50676032 ECH
Car04g01858 04 19940747 19941838 Car01g02497 01 50673884 50676032 ECH