Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02496 ATGGGAAAAGATGTTGAAGTTCAAGAACAAGGTGGTGAATATTCAGCTAAGGATTATCAAGATCCACCACCAGCACCTTTGTTTGATCCAGCAGAGTTAACAAAGTGGTCTTTGTATAGAGCTGTGATAGCAGAGTTCATAGCAACACTTCTGTTCCTTTACATCACTGTGTTGACCATTATTGGTTATAGTAGACAAACTGATACCACTATTACAGGTAACACTGAATGTGATGGTGTTGGAGTTTTGGGTATTGCTTGGGCTTTTGGTGGTATGATCTTCGTCCTTGTTTACTGCACCGCCGGTATCTCTGGAGGACACATAAATCCAGCAGTGACATTTGGGCTGTTTTTGGGACGCAAGGTGTCTTTAATAAGGGCTGTACTATACATAATAGCACAATGTTTAGGTGCAATTTGTGGTGCTGGTCTTGCAAAAGGGTTCCAAAAATCATACTACAATAGGTACCATGGAGGTGTTAATTTGGTGTCTGATGGTTATAGTAAAGGCACTGCTTTGGGTGCTGAAATTATTGGTACCTTTGTTTTAGTTTACACTGTTTTCTCAGCCACTGATCCTAAGAGAAGTGCTAGGGATTCACATGTTCCTGTATTGGCACCACTTCCTATTGGATTTGCTGTCTTCATGGTTCATTTGGCAACAATCCCTGTTACCGGTACCGGAATTAACCCTGCTAGGAGTTTTGGACCCGCTGTTATCTACAACAACGACAAAGCTTGGGATGATCAGTGGATTTACTGGGTTGGACCATTTATTGGAGCTGCAATAGCTGCATTCTATCACCAATTTATTCTAAGAGCAACAGCAATAAAGGCTCTTGGATCCTTCAGGAGCAACCCTTAA 864 0.4178 MGKDVEVQEQGGEYSAKDYQDPPPAPLFDPAELTKWSLYRAVIAEFIATLLFLYITVLTIIGYSRQTDTTITGNTECDGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLGRKVSLIRAVLYIIAQCLGAICGAGLAKGFQKSYYNRYHGGVNLVSDGYSKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIYNNDKAWDDQWIYWVGPFIGAAIAAFYHQFILRATAIKALGSFRSNP 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02496 287 PANTHER AQUAPORIN PIP2-7 1 286 - -
Car01g02496 287 Gene3D Glycerol uptake facilitator protein. 25 287 IPR023271 -
Car01g02496 287 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g02496 287 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g02496 287 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g02496 287 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g02496 287 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g02496 287 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g02496 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 286 IPR034294 -
Car01g02496 287 MobiDBLite consensus disorder prediction 1 23 - -
Car01g02496 287 ProSitePatterns MIP family signature. 107 115 IPR022357 -
Car01g02496 287 Pfam Major intrinsic protein 32 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g02496 287 TIGRFAM MIP: MIP family channel proteins 44 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g02496 287 CDD MIP 40 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g02496 287 SUPERFAMILY Aquaporin-like 32 273 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02496 Car-Chr1 50667013 50668878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02496 1 285 Major Intrinsic Protein MIP AT5G60660 79.649 2.72e-168 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02496 K09872 - gmx:732604 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02496 01 50667013 50668878 Car01g02496 01 50667013 50668878 ECH
Car06g03485 06 65717405 65719511 Car01g02496 01 50667013 50668878 ECH
Car03g02476 03 70532133 70534078 Car01g02496 01 50667013 50668878 ECH
Car01g02496 01 50667013 50668878 Car06g03485 06 65717405 65719511 PCT