Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02492 ATGACTCAACCTTCTTGCAAACGAACTGTTTCTCTTCCACCCCTTCACAAGGAGCATAATCTTCTGTTTGAAATACCCTTGAAAACATCAGAAGAATCTAGttcttcttcttcttcatcttcatcCAAGGATTTTGTTGGAATAAAGATGCCATTAACACCAAGTCCAACACCAACTCACAAGAGGGTTAATTTTCTTGTGACATCTCGTTCTGTTGATGCTCCAATTGAAAACAATTCATCAGGGTCTTCAACAACAAGACCAAAATCATCCAATAGAAGTATTTTACCAAAATTGAATTTCAGGTATAGAACATCTTCACCAGATATTGAAAAGGCTATAACACTACCTGCTCCAGAAACTTCTTTTTCAGGGAATCAAGACAAGACTACTATCTCAGGATCACTCTCTCTAACTAAGCTATTTACTCCTAAGATTAAGAGAACATCATCATTACCAGTGGAAGAAATCTTTGGCCGTGCAAACACTGAATCTGCTTTTGGTGGATGTCTTGGTGCTTCTCCATATGGGACAACGATAGCTCGCACTCGTTCAGAGCCAGTAGATAGCCAAGAAAAAAGCATAAGGAAAATGGATACGTTTTTCCGCATTATTCCTTCCACCCCAGGTGTAAAGGAAGTGAAAGAATGGTTAAAAACGTCCACAGCAAAGGATACTGAAAGCGACGGTGACGGTGAAGATATAGCTGAAGACGAAGCTGTGTGTAGAATTTGTCTGATTGAGCTATGTGAAGGAGGTGAGACATTGAAGATGGAATGCTGTTGCAAAGGTGAACTTGCTTTGGCTCACCAAGAATGTGCGATTAAGTGGTTTAGTATCAGAGGCAACAAGACCTGTGATGTATGCAAGGAGGAAGTTCAGAACCTCCCTGTCACTCTCTTACGGATTCAAAATATAATTGCTACACATAACACTTTAATTTGTGTGCTAAAATTTAACAGGGTTTGGCAGGAGTTGCCTGTGCTTGTCATTGTCAGCATGCTTGCTTATTTCTGTTTCCTTGAGCAGCTTTTGGTTGGAAAAATGGGAACCAAAGCAATTTTCATTTCTCTTCCATTTTCCTGTGTACTTGGTCTAGTTTCCTCTATGACATCAACAACCATGGTGAGGAGCAAGTTCATATGGATTTATGCATCTGCCCAATTTGCTTTGGTGGTTCTCTTCGCGCATATATTTTACCCATTGGTCGGTAAACAAGCAGTTCTAGCAATCCTTCTTGCATCATTTGCTGGGTTTGGTGTAATGATGAGCGGAACTTCAGTTCTTGCGGAGTTACTTAAATGGAGAAGAAGATGGCAGGCTTTCTCAGAGCAGCGTCGCAGTTCTCAAGTAATGACACAAGAAGAACTATATCCTCAAGGTGTAATTACCACACAATCAGGCCTTCCTAACCAAAACCAAACTGTAGTGCAACTGCAAACTCAACAGAACTCAAATTCATAG 1464 0.3996 MTQPSCKRTVSLPPLHKEHNLLFEIPLKTSEESSSSSSSSSSKDFVGIKMPLTPSPTPTHKRVNFLVTSRSVDAPIENNSSGSSTTRPKSSNRSILPKLNFRYRTSSPDIEKAITLPAPETSFSGNQDKTTISGSLSLTKLFTPKIKRTSSLPVEEIFGRANTESAFGGCLGASPYGTTIARTRSEPVDSQEKSIRKMDTFFRIIPSTPGVKEVKEWLKTSTAKDTESDGDGEDIAEDEAVCRICLIELCEGGETLKMECCCKGELALAHQECAIKWFSIRGNKTCDVCKEEVQNLPVTLLRIQNIIATHNTLICVLKFNRVWQELPVLVIVSMLAYFCFLEQLLVGKMGTKAIFISLPFSCVLGLVSSMTSTTMVRSKFIWIYASAQFALVVLFAHIFYPLVGKQAVLAILLASFAGFGVMMSGTSVLAELLKWRRRWQAFSEQRRSSQVMTQEELYPQGVITTQSGLPNQNQTVVQLQTQQNSNS 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02492 487 MobiDBLite consensus disorder prediction 27 61 - -
Car01g02492 487 CDD RING_CH-C4HC3_MARCH 242 290 - -
Car01g02492 487 Pfam RING-variant domain 242 289 IPR011016 GO:0008270
Car01g02492 487 MobiDBLite consensus disorder prediction 27 46 - -
Car01g02492 487 PANTHER OS02G0165000 PROTEIN 17 456 - -
Car01g02492 487 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 17 456 - -
Car01g02492 487 MobiDBLite consensus disorder prediction 74 97 - -
Car01g02492 487 ProSiteProfiles Zinc finger RING-CH-type profile. 234 296 IPR011016 GO:0008270
Car01g02492 487 SMART ringv_2 241 290 IPR011016 GO:0008270
Car01g02492 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 297 IPR013083 -
Car01g02492 487 SUPERFAMILY RING/U-box 238 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02492 Car-Chr1 50626973 50632101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02492 239 296 C3H Transcription Factor Family AT2G37950 42.373 2.16e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02492 - - cam:101488558 851.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02492 01 50626973 50632101 Car01g02492 01 50626973 50632101 ECH
Car01g02492 01 50626973 50632101 Car06g03491 06 65801410 65805926 PCT