Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02483 ATGTCCGTCATCGACATTCTCTTCCGTGTTGACGCCGTTTGCAAAAAATATGACAAATACGACATTGACAAACAGCGTGAACTCAACGCTTACGGTGATGACGCCTTCGCTCGTCTTTACGCCGCAGTTGAATCCACCATTCAACAAGCTCTCAATAAATCTGAGGTTGCTTCGACGGAGAAGAATAGAGCAGTTGCTGCGACTTTGAATGCAGAGGTTCGTAGATCCAAGGGTAGATTGATGGATGAAGTTCCTAAACTGCGCAAGCTTGTAAACAAGAAGGTTAAAGGTCTCACAAAAGAAGACATAGCCATTCGTCAGGATCTTGTTCTTGCGTTGCCAGAAAGAATCCAAGCAATACCAGATGGGATTACCTCTGCTGCTAGCCATACTGCAGGATGGGCGGCTACCTCATCTCATCCGCATATCAAGTTTGATTCATCAGAGGGACATCTTGACAGTGAATATTTCAATCAAAGTGAAGAATCCAGTCAGTTTCGACATGAATATGAAATGCGCAAGATGAAACAGGATGAAGGCCTTGATATCATATCAGAAGGATTGGATACTTTGAAAAATCTAGCCCATGATATGAATGAGGAATTAGATCGGCAAGTTCCTTTAATGGATGAAATCGACACAAAGGTGGATAAGGTGACAAGTGATGTAAGAAACACTAACTTGAGACTCAAGAAAACTCTCACCGAGCTGAGGTCTAGTCGAAATTTCTGCATCGACATCATTCTACTGTGTGTTCTTCTGGGAATCGTTACATATTTATACAATGCACTCAGGTGA 798 0.4248 MSVIDILFRVDAVCKKYDKYDIDKQRELNAYGDDAFARLYAAVESTIQQALNKSEVASTEKNRAVAATLNAEVRRSKGRLMDEVPKLRKLVNKKVKGLTKEDIAIRQDLVLALPERIQAIPDGITSAASHTAGWAATSSHPHIKFDSSEGHLDSEYFNQSEESSQFRHEYEMRKMKQDEGLDIISEGLDTLKNLAHDMNEELDRQVPLMDEIDTKVDKVTSDVRNTNLRLKKTLTELRSSRNFCIDIILLCVLLGIVTYLYNALR 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02483 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 171 233 IPR000727 -
Car01g02483 265 PANTHER SYNTAXIN-72 1 262 - -
Car01g02483 265 Pfam SNARE domain 208 257 IPR000727 -
Car01g02483 265 SMART tSNARE_6 166 233 IPR000727 -
Car01g02483 265 ProSitePatterns Syntaxin / epimorphin family signature. 177 216 IPR006012 GO:0005484|GO:0006886|GO:0016020
Car01g02483 265 PANTHER SYNTAXIN 1 262 IPR045242 -
Car01g02483 265 CDD SNARE_Qc 176 232 - -
Car01g02483 265 SUPERFAMILY SNARE fusion complex 165 232 - -
Car01g02483 265 Gene3D - 170 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02483 Car-Chr1 50576593 50578749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02483 1 265 SNARE and Associated Proteins AT3G09740 66.292 3.67e-135 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02483 K08506 - gmx:100777251 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02483 01 50576593 50578749 Car01g02483 01 50576593 50578749 ECH