Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02480 ATGTTTTGTAAGACACTCACTGCCTCTGATACAAGCACTCATGGAGGGTTTTCGGTTCCTCGTAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAACCAGCAAAGACCCTCTCAAGAGCTTGTTGCAAAAGACCTGCATGGCATGGTGTGGAAATTTCGCCATATTTACAGAGgtcagccaaagaggcatcttctcactactggctggagtatttttgttagccaaaagaatcttgtttctggggatgcagtgctctttctaagGGGTGAAAATGGAGAGTTAAGATTGGGAATCAGAAGAGCTGCTCGACCGAGAAATGGTCTTCCTGAATCAATTGTTGGAAACAAGAGTTGTTATCCTAGTTTCCTTTCTTCTGTGGCTAATGCTATCTCTGCAAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCAAGTAATGCTGATTTTGTTGTGCCATACCAAAAGTTCGTTAAAAGCATAAGGAATCCAGTGACCATAGGGACAAGATTCAAAATGAAATTTGAAATGGATGAATCTCCAGAAAGGTATGGTGGTGGTATAGTGACTGGAATGAGTGATTTGGATCCCTATAAATGGCCCAAGTCAAAATGGCGATGCTTGATGGTCAGATGGGATGAAGATATTGAGACTAAACATCAAGATAGAGTCTCTCCATGGGAGATTGATCCTTCTACTTCTCTCCCTCCGTTGAACATTCAATCTTCCCGAAGGCTGAAGAAACTGCGGACGGGTCTGCAAGCTGACTCACCCGGTCACCTTATCACTGACGACAGAGGGTTTATGGACTTTGACGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAAAACAGGTTTTATGTCACTATATTATGGATGTGACACAATAACTAAGCAGAAAGAATTTGATATCAATTCTCTAAGCCACACTAATCAATTTGATATCAATTCACTAAGCCATACTAATCTTGTATCAACTGGAGCAAGAAAGATTACTTCTTCCGAGTTTACGAGACTCCGCCCTTCTAGTTATGCAGGCTTCACAGAAACTAACAGGTTTCCGAGGGTCTTGCAAGGTCAAGAAATATGTCCATTGAGTTCCCTGACAGGAAAGGTTGATCTAAACCTTAATGCTTGGGGTAAAACCAATGTCAGCTACACAAATTACAACTTGGATCAAACAACCAGACCTAACTTTCACTCGTTAGGACAACAAATTCTTCATAATGCCTATTTACCTTATGGTGATATACGCAAAGCTTGTCAAGGTAGCAGCATGTTGTGTTCCAGACCAACCAATTTCCAGCTAGAGAATCTCCCATTTAGTACTTCTTCAGCTCAGAAGATAGGTACCATGAGAAATGAAGTTGGACTGTCGAGTCTCACAATCCCGAATGAGAAGAATTTGCAGGACAATATTTCAGGTGCTACTTCTCTAGGGGAAAAAATGAGGATTTCAAATGATGAAAATTTCAAGGAGAAGAAGGTAAATGCTTGTAAACTATTTGGATTTTTCTTGTCCGGGGAAACCACATCGCAAAATCTACCAAACTCTGCTAAAAGAAGTTGCACAAAGGTGAGCGACAATAGCAACAGAGTTATACTGTGA 1620 0.3864 MFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLHGMVWKFRHIYRGQPKRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPESIVGNKSCYPSFLSSVANAISAKSMFHVFYSPRASNADFVVPYQKFVKSIRNPVTIGTRFKMKFEMDESPERYGGGIVTGMSDLDPYKWPKSKWRCLMVRWDEDIETKHQDRVSPWEIDPSTSLPPLNIQSSRRLKKLRTGLQADSPGHLITDDRGFMDFDESVRSPKVLQGQEKTGFMSLYYGCDTITKQKEFDINSLSHTNQFDINSLSHTNLVSTGARKITSSEFTRLRPSSYAGFTETNRFPRVLQGQEICPLSSLTGKVDLNLNAWGKTNVSYTNYNLDQTTRPNFHSLGQQILHNAYLPYGDIRKACQGSSMLCSRPTNFQLENLPFSTSSAQKIGTMRNEVGLSSLTIPNEKNLQDNISGATSLGEKMRISNDENFKEKKVNACKLFGFFLSGETTSQNLPNSAKRSCTKVSDNSNRVIL 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02480 539 ProSiteProfiles B3 DNA-binding domain profile. 2 104 IPR003340 GO:0003677
Car01g02480 539 PANTHER AUXIN RESPONSE FACTOR 1 532 - -
Car01g02480 539 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 532 IPR044835 GO:0003677|GO:0006355|GO:0009725
Car01g02480 539 Pfam Auxin response factor 128 209 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car01g02480 539 Gene3D - 166 237 - -
Car01g02480 539 Gene3D - 1 104 IPR015300 -
Car01g02480 539 SMART B3_2 2 104 IPR003340 GO:0003677
Car01g02480 539 Pfam B3 DNA binding domain 2 103 IPR003340 GO:0003677
Car01g02480 539 SUPERFAMILY DNA-binding pseudobarrel domain 1 112 IPR015300 -
Car01g02480 539 CDD B3_DNA 1 102 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02480 Car-Chr1 50556347 50561675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02480 1 537 B3 DNA Binding Superfamily AT5G60450 52.661 9.88e-177 515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Car01g02480 B3 2.5e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02480 - - gmx:100812909 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02480 01 50556347 50561675 Car01g02480 01 50556347 50561675 ECH
Car01g02480 01 50556347 50561675 Car06g03508 06 66011218 66017725 PCT