Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car01g02479 | ATGGATTTGGTTTCTAGTTGTAAGGAAAAATTGACATTTTTCCGTGTAAAAGATCTCAAAGATGTGCTTACTCAGTTAGGGCTTTCAAAGCAGGGAAAGAAGCAGGATCTTGTTGATAGGATATTATCTATTCTCTCAGATGAACAAGTTCCCAAAGTACGGGCTAAGAAGAACGCTGTTGAAAAAGAACAAGTGGTAAAATTAGTGGATGAAACATATAGAAAATTACAGGTATCTGGGTCCACTGATTTAGCATCAAAGGGGCAGGGTGGCTCAGACAGCAGTAATGTGAAAATTAAAGGTGAAATTGATGACTCCTTTCAATCAGATACAATGGTTCGCTGTCTCTGTGGAAGTTCATTGGAAACAGATCTATTGATCAAGTGTGAAGATACAAGATGCCCTGTGTCGCAGCATATCAACTGTGTTATTATTCCGGATAAACCCGTTGACATTGAAGGAATCCCGCCAATTCCAGATAAATTCTATTGTGAAATATGCCGTCTCAGTCGTGCAGACCCGTTTTCTGTTTCAATGCAACACCTTTTACTTCCGGTGAAGTTGACTACAACTAATATTCCAACTGATGGAACCAACCCTATGCAGAGTGTTGAGAAAACATTTCAATTTACAAGAACAACCAAGGAATTAGTATTAAAATCGGAATTTGATATTCAGGCATGGTGCATGCTTCTGAACGACAAAGTTTCATTTAGGATGCAATGGCCACAATATGCAGACCTACTAGTCAATGGTTTTCCTGTTCGTGCAATTAATAGACCTGGTTCACAATTGCTTGGGGCTAATGGCCGCGACGATGGTCCAATTATCACACCATACGCAAAAGAAGGAATTAATAAGATTTCCTTAACGGGGTGCGACACTCGCATTTTCTGTTTAGGAGTTCGCATTGTTAAAAGGCGCAGCTTGCAACAGATCCTGAGCTTGATTCCAAAAGAGTCCGATGGTGAGCATTTTGAAGATGCTCTTGCACGTGTCTGTTTTCGTGCTGGGGGTGGAAATTCAGCTGATGAAGCTGGTAGTGACAGTGATCTAGAAGTGGTTTCGGATACTTTTAGCATCAACCTTCGTTGTCCAATGAGTGGGTCAAGAATGAAGATAGCAGGAAGATTTAAACCGTGTGTTCACATGGGTTGTTTTGATCTTGAAGTTTTTGTGGAAATGAACCAACGTTCAAGAAAGTGGCAATGCCCCATATGTCTCAGAAACTATGCATTGGAGAATATCATTATTGATCCTTATTTCAATCGTATCACTTCTATGATGAAAAATTGTGGAGAAGAGTTTACAGAGGTGGAAGTGAAGCCTGATGGTTATTGGCGCGTCAAGGCTAAAAATGAAAGTGAATATCGTGAGTTAGGGGATCTTGCTCAATGGCACTGCCCTGATGGATCCCTCTCTGTTTCTACAAGTGGAGAAGACAAGAAAGTGGAGACTTTGAAGGTCAAACTGGAAGGCGTTCCAGACAGTCCTACTGGCTTAAGACTTGGCATTAGGAAGAATTGTAATGGAGTTTGGGAAGTCAGCAAACCCAAGGACACAAACACCTCTTCTGATAATAGATTGAATGCGAATTTTGGAAATCATGAACATGTGGTTATTCAAATGAGCAGCAGTGGCACTGGAAGTGGATTGGATGGTGATGATCCAAGCGTAAATCAGGATGGTGGTGGGCAAATGGATTATTCTACTACCAATGGGGTTGAGACGGATTCTGTGTGTCATGCAAATGTTGAGTCAAATTATGGATATACTGTTCCTAACACTTCTGCTCCAATGAGTAATGCAGAAGTTATTGTTCTTAGTGATTCTGATGATGATGATATATTAGTGTCTCCACCAATTGGTTGCGAACATAATCAAACTGGTGATGCAGTTGATGTTTACTCAGTGCCTCCTCCACCTGGAATTATCGATCCATATGCAGAAGATCATAATGTTGGTGGAAATCCATGCTTAGGAGGTTTTAATAATCCCAGTGAAGACGATTTTGGGATTCCCTCCCTCTGGCCGATGCATTCTGGAACACAAGCAAGCTCGGGATTTCAACTATTCAGTTCTGATGTGGATGTGTCTGATGCATTGGTCCATGGTGATATTAATTGTTCCTCATCACTGAATAGCTATACGTTGGCTCCAGACACTGCTCTGGGATCTAGTGCTCTAATACCAAATGCATCCATTGATCGGTCTGACACTGATTTAAATGGTGGCTTGGTTGACAATCCATTGGCATTTGGTGGAGAGGATCCCTCGCTTCAGATTTTTCTCCCTACTAGACCAGCGGTTTCATCTGTGCAGCATGAATTAAGAGATCACACAGATGTGTCAAATGGTGTCTGTACAGAGGATTGGATCTCTCTTAGGCTTGGGGATGGGGCTGGTGGCAGTAATGGGGATGGTTCCACACCAAATGGTTTGAATTCCAGACCACAAATTACATCCAGAGAAGATGCCCCAGATTCTTTAACTGATACTGCTTCTTTGCTTCTTGGTATGAATGATGCCAGATCTGACAAAGCAAGTAGGAAAAGATCAGATGGCCCTTTCTCATTTCCCCGCCAAAAACGTTCAGTAAGGCCTCGCTTGTATCTTTCTATTGATTCAGATTCGGAGTAG | 2640 | 0.4182 | MDLVSSCKEKLTFFRVKDLKDVLTQLGLSKQGKKQDLVDRILSILSDEQVPKVRAKKNAVEKEQVVKLVDETYRKLQVSGSTDLASKGQGGSDSSNVKIKGEIDDSFQSDTMVRCLCGSSLETDLLIKCEDTRCPVSQHINCVIIPDKPVDIEGIPPIPDKFYCEICRLSRADPFSVSMQHLLLPVKLTTTNIPTDGTNPMQSVEKTFQFTRTTKELVLKSEFDIQAWCMLLNDKVSFRMQWPQYADLLVNGFPVRAINRPGSQLLGANGRDDGPIITPYAKEGINKISLTGCDTRIFCLGVRIVKRRSLQQILSLIPKESDGEHFEDALARVCFRAGGGNSADEAGSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCVHMGCFDLEVFVEMNQRSRKWQCPICLRNYALENIIIDPYFNRITSMMKNCGEEFTEVEVKPDGYWRVKAKNESEYRELGDLAQWHCPDGSLSVSTSGEDKKVETLKVKLEGVPDSPTGLRLGIRKNCNGVWEVSKPKDTNTSSDNRLNANFGNHEHVVIQMSSSGTGSGLDGDDPSVNQDGGGQMDYSTTNGVETDSVCHANVESNYGYTVPNTSAPMSNAEVIVLSDSDDDDILVSPPIGCEHNQTGDAVDVYSVPPPPGIIDPYAEDHNVGGNPCLGGFNNPSEDDFGIPSLWPMHSGTQASSGFQLFSSDVDVSDALVHGDINCSSSLNSYTLAPDTALGSSALIPNASIDRSDTDLNGGLVDNPLAFGGEDPSLQIFLPTRPAVSSVQHELRDHTDVSNGVCTEDWISLRLGDGAGGSNGDGSTPNGLNSRPQITSREDAPDSLTDTASLLLGMNDARSDKASRKRSDGPFSFPRQKRSVRPRLYLSIDSDSE | 879 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car01g02479 | 879 | Gene3D | SAP domain | 1 | 64 | IPR036361 | - | |
| Car01g02479 | 879 | PANTHER | ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN | 9 | 813 | - | - | |
| Car01g02479 | 879 | ProSitePatterns | Zinc finger PHD-type signature. | 115 | 167 | IPR019786 | - | |
| Car01g02479 | 879 | SUPERFAMILY | SAP domain | 1 | 64 | IPR036361 | - | |
| Car01g02479 | 879 | MobiDBLite | consensus disorder prediction | 799 | 879 | - | - | |
| Car01g02479 | 879 | MobiDBLite | consensus disorder prediction | 844 | 858 | - | - | |
| Car01g02479 | 879 | CDD | PHD_Bye1p_SIZ1_like | 114 | 167 | - | - | |
| Car01g02479 | 879 | SMART | PHD_3 | 114 | 168 | IPR001965 | - | |
| Car01g02479 | 879 | SMART | sap_9 | 11 | 45 | IPR003034 | - | |
| Car01g02479 | 879 | Pfam | MIZ/SP-RING zinc finger | 361 | 408 | IPR004181 | GO:0008270 | |
| Car01g02479 | 879 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 339 | 449 | IPR013083 | - | |
| Car01g02479 | 879 | Pfam | SAP domain | 14 | 42 | IPR003034 | - | |
| Car01g02479 | 879 | PANTHER | E3 SUMO-PROTEIN LIGASE SIZ1 | 9 | 813 | - | - | |
| Car01g02479 | 879 | MobiDBLite | consensus disorder prediction | 805 | 838 | - | - | |
| Car01g02479 | 879 | ProSiteProfiles | SAP motif profile. | 11 | 45 | IPR003034 | - | |
| Car01g02479 | 879 | SUPERFAMILY | FYVE/PHD zinc finger | 107 | 171 | IPR011011 | - | |
| Car01g02479 | 879 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 103 | 173 | IPR013083 | - | |
| Car01g02479 | 879 | ProSiteProfiles | Zinc finger SP-RING-type profile. | 348 | 431 | IPR004181 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car01g02479 | Car-Chr1 | 50543749 | 50554782 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car01g02479 | - | K22403 | gmx:100811996 | 1306.97 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Car01g02479 | 01 | 50543749 | 50554782 | Car01g02479 | 01 | 50543749 | 50554782 | ECH | |
| Car01g02479 | 01 | 50543749 | 50554782 | Car06g03510 | 06 | 66031892 | 66042837 | PCT |