Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02472 ATGGAGAGTGACAAAATTACAAACATATTTTCTCAATACTCTTCAACTTCTCCACAAGTTGTGATGAGTCCTTGTGCTGCTTGCAAGTTTTTGAGAAGAAGATGTGCTGAAAAATGTGTGTTGGCACCTTACTTCCCTCCAACTCAACCTGCCAAATTTACCACTGTTCATAGAGTATTTGGTGCCAGCAATATCATCAAGATATTACAGgaaattccagagtctcaaagagctgatgcagtgagcagcatggtttatgaggcaagtgcaagaataaGAGATCCAGTATATGGTTGTGCAGGCACAATTTGTCACCTTCAAAAGCAAATCAATGAGCTTCAAGAACAATTAGCTAAGACACAAGCTGAGATTATTAACAAGCAATTCGAACAAGCTAATCTAATGACTCTGATTTGCAATATGGAAATGGAAGAAACTCCACAAGAATCACCACAACAATCATTTGACAACTTCATTTCAAGTCCTAGCCACAATAGTGACTATCATAACAACCTCAATTTCTTTGAGGAGAATAATATTGGCCTAATCTCATCTTGGGAGCCTCTTTGGACATTTAAAATTAATGAGAACTAA 594 0.3266 MESDKITNIFSQYSSTSPQVVMSPCAACKFLRRRCAEKCVLAPYFPPTQPAKFTTVHRVFGASNIIKILQEIPESQRADAVSSMVYEASARIRDPVYGCAGTICHLQKQINELQEQLAKTQAEIINKQFEQANLMTLICNMEMEETPQESPQQSFDNFISSPSHNSDYHNNLNFFEENNIGLISSWEPLWTFKINEN 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02472 197 ProSiteProfiles LOB domain profile. 23 124 IPR004883 -
Car01g02472 197 Pfam Lateral organ boundaries (LOB) domain 24 121 IPR004883 -
Car01g02472 197 Coils Coil 103 130 - -
Car01g02472 197 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 188 - -
Car01g02472 197 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 14 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02472 Car-Chr1 50452775 50455060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02472 20 191 AS2 family AT2G28500 63.243 2.15e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Car01g02472 LOB 9.5e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02472 - - gmx:100819336 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02472 01 50452775 50455060 Car01g02472 01 50452775 50455060 ECH
Car06g03518 06 66157273 66159173 Car01g02472 01 50452775 50455060 ECH