Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02468 ATGTTTCCCGGGAAAATGGATCAGTTCATTGATAACTTGCCGCCGATGGATCTGATGCGATCCGAGAAGATGACTTTCGTTCAACTCATCATTCCCGCTGAGTCCGCTCACCGTGCCATCTCTTATTTAGGCGAACTCGGTCTTCTTCAATTCCGAGACTTAAATGCTGAAAAAAGCCCTTTCCAGAGAACATTTGTTAATCAGGTAAAGCGATGTGCAGAGATGTCAAGAAAGCTACGATTTTTTAAGGATCAAATTAATAAAGCTGGTCTAATGTCGTCTTCTCGTACTGTATTGCAACCGGACATTGACTTGGAGGATTTAGAGGTACATCTTGCTGAGCATGAACATGAACTAATTGAAATGAATTCTAATAGTGACAAACTTCGGCAATCGTATAATGAACTTCTGGAATTCAAAATTGTATTACAGAAGGCATGCAGTTTTCTTATTTCAAGTCATGGCCGTCCTGTTTCAGACGAGAGAGAACTACAAGAGAATGTATACTCAAATGATGACTACATTGAGACAGCATCTTTGCTTGAACAGGAAATGAGACCTCAACCATCAAATATGTCTGGTTTAAGATTTATCAGTGGGATAATTTGTAAATTTAAGGTTCTTAGGTTCGAAAGGATGTTATTTCGTGCTACAAGAGGCAATATGCTTTTCAATCAGGCACCAGCTGGTGAACAAATCATGGATCCTATTTCATCTGAAATGATCGAGAAAACAGTATTTGTTGTGTTTTTCTCCGGGGAACAGGCAAGAACAAAAATTCTGAAAATTTGTGAGGCATTTGGAGCGAATTGTTATCCTGTTCCTGAAGATATAAGTAAGCAGGGGCAAATAACTAGGGAGGTCACCTCACGTCTTACTGACTTAGAGGCAACTTTGGATGCTGGGATAAGGCACCGCAATAAGGCGCTAGCTTCTATTGCAGACCATCTAACAAAATGGATGAACCTGGTAAGAAGAGAGAAGGCTGTGTATGATACACTGAACATGTTAAATTTTGATGTTACAAAAAAATGTCTTGTTGGAGAGGGATGGTGCCCTATGATTGCAAAAACACAGATGCAGGAGGCACTGCAACGTGCAACTTTTGATAGCAATTCTCAAGTTGGTATAATCTTCCATCAAATGGATGCAGTGGAATCCCCACCTACATATTTTAGGACCAATACTTTCACAAATCCGTATCAGGAAATTGTTGATGCATATGGTGTTGCAAGATACCAAGAAGCAAATCCTGCAGTTTACACAACTATTATATTCCCCTTCCTATTTGCTTTGATGTTTGGGGACTGGGGTCATGGAATTTGCCTGTTGCTGGGAGCATTAGTTCTTATAGCACGTGAAAACAAGCTCAGTACACAGAAGCTTGGAAGCTTCATGGAGATGCTATTTGGTGGGCGCTATGTGATTCTTTTGATGTCACTATTTTCAATCTATTGTGGGTTAATCTACAATGAGTTCTTTTCTGTTCCTTTTCACATATTTGGCGCATCAGCTTATCAATGCCGTGATAGTTCATGCAGGGATGCCTACACTATTGGCTTAATCAAATACCGTGAACCATACCCATTTGGTGTGGATCCCAGCTGGCGTGGAAGTCGTTCAGAATTGTCTTTTCTGAACTCTATGAAGATGAAGATGTCCATTCTGTTCGGCGTGGCACATATGAACTTGGGAATTATATTAAGTTATTTCAATGCTCGTTTCTTTGGAAGTTCACTGGATATAAGGTACCAATTTGTGCCACAGATGATCTTCCTGAACAGTCTATTTGGATATCTTTCCCTTCTCATTATTGTTAAATGGTGTACTGGTTCTCAAGCAGACCTCTATCATGTGATGATATATATGTTTTTAAGCCCTACAGACAGTCTTGGTGAGAATCAGTTATTTTGGGGCCAAAGACCACTTCAAATTGTGTTATTGCTTTTGGCTGTAGTTGCAGTTCCATGGATGCTCTTTCCAAAACCTTTTATACTAAAGAAGCTTCATACTGAGCGATTTCAAGGTCGTAATTATGGCATTTTGAATACTTCTGAGATGGATCTCGAGGCGGAGCCAGATTCTGCCAGGCAACATCATCATGAAGAATTCAATTTCAGTGAGGTCTTTGTTCATCAAATGATCCACTCCATCGAGTTTGTTTTAGGTTCAGTTTCAAATACAGCATCATATCTTCGACTTTGGGCGTTAAGTTTGGCTCACTCGGAACTTTCTACAGTTTTCTATGAGAAAGTGTTGCTTCTTGCTTGGGGGTACGACAACCTTGTCATTCGGTTAGTGGGGCTAACTGTTTTCGCCTTTGCAACTGCCTTTATACTACTTATGATGGAGAGTCTCAGTGCTTTTCTTCATGCCCTGCGGCTTCACTGGGTAGAATTTCAAAATAAATTCTACTTTGGTGATGGCTACAAGTTCAAGCCCTTTTCATTTGCTTCTTTAACCGAGGATGATGATTGA 2478 0.4019 MFPGKMDQFIDNLPPMDLMRSEKMTFVQLIIPAESAHRAISYLGELGLLQFRDLNAEKSPFQRTFVNQVKRCAEMSRKLRFFKDQINKAGLMSSSRTVLQPDIDLEDLEVHLAEHEHELIEMNSNSDKLRQSYNELLEFKIVLQKACSFLISSHGRPVSDERELQENVYSNDDYIETASLLEQEMRPQPSNMSGLRFISGIICKFKVLRFERMLFRATRGNMLFNQAPAGEQIMDPISSEMIEKTVFVVFFSGEQARTKILKICEAFGANCYPVPEDISKQGQITREVTSRLTDLEATLDAGIRHRNKALASIADHLTKWMNLVRREKAVYDTLNMLNFDVTKKCLVGEGWCPMIAKTQMQEALQRATFDSNSQVGIIFHQMDAVESPPTYFRTNTFTNPYQEIVDAYGVARYQEANPAVYTTIIFPFLFALMFGDWGHGICLLLGALVLIARENKLSTQKLGSFMEMLFGGRYVILLMSLFSIYCGLIYNEFFSVPFHIFGASAYQCRDSSCRDAYTIGLIKYREPYPFGVDPSWRGSRSELSFLNSMKMKMSILFGVAHMNLGIILSYFNARFFGSSLDIRYQFVPQMIFLNSLFGYLSLLIIVKWCTGSQADLYHVMIYMFLSPTDSLGENQLFWGQRPLQIVLLLLAVVAVPWMLFPKPFILKKLHTERFQGRNYGILNTSEMDLEAEPDSARQHHHEEFNFSEVFVHQMIHSIEFVLGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLTVFAFATAFILLMMESLSAFLHALRLHWVEFQNKFYFGDGYKFKPFSFASLTEDDD 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02468 825 Pfam V-type ATPase 116kDa subunit family 42 817 IPR002490 GO:0033179|GO:0046961|GO:1902600
Car01g02468 825 Coils Coil 105 132 - -
Car01g02468 825 PANTHER VACUOLAR PROTON ATPASES 10 825 IPR002490 GO:0033179|GO:0046961|GO:1902600
Car01g02468 825 PIRSF ATP6V0A1 14 825 IPR026028 GO:0000220|GO:0046961
Car01g02468 825 PANTHER VACUOLAR PROTON ATPASE A1 10 825 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02468 Car-Chr1 50409662 50420800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02468 6 818 Primary Pumps ATPases(2) AT2G28520 80.736 0.0 1362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02468 K02154 - gmx:100776037 1525.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02468 01 50409662 50420800 Car01g02468 01 50409662 50420800 ECH
Car01g02468 01 50409662 50420800 Car06g03525 06 66265490 66280275 PCT