Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02464 ATGTTAGATCTTAATCTGAATGCGGATTCGACTCAGAATGATGACTCGCCCGTGCTTTTTGAAAAGATTCCAGAAGCTTCTTCTGGAACTTCCAATTCCTCCATCGTGAATGCGGATGCCTCGAGTAGCGGCGCCGGCACCGGCACCGGCGACGAAGAGTCGGGCTCTACACGCGCCGGCGAGGCCTACACCTTCAATTTCGGTATCCTTAAGGTGGAAGATGGAAATGACGTTGTTGCAACGAAGGAGCTGTTTCCGGTGAGTGTGCGAAATTTGCAGGGGCAGTCTTTGGCGATGATGTTTCCGACGAGGAAGAGTGAGATGGATCTTACGCTGGATCATCATGGAGGTGAAAATGGAATTGTTCAGGTTCAACAACGACCTCAGGTGAAGAAAAGTAGGAGAGGACCGAGGTCTCGAAGCTCTCAGTACAGAGGAGTTACGTTCTACAGGAGAACTGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAGCAAGTTTATTTAGGTGGATTTGATACAGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATAAAGTTCAGGGGACTTGATGCTGATATCAATTTCAATCTCGTTGAGTATGAGGAGGATATGAAACAGATGAAGAATCTTTCAAAGGAGGAATTTGTGCACATACTACGTCGCCACAGTAACGGTTTCTCAAGGGGGAGTTCAAAATACAGAGGAGTGACACTTCACAAATGTGGTCGTTGGGAAGCTCGAATGGGACAACTCCTTGGCAAAAAGGCTTATGACAAAGCAGCTATCAAGTGCAATGGAAGAGATGCGGTGACTAACTTTGAGCCAAGTACATatgaaaatgaaatgaaaacagaaagtattaatgaaGGTGGCAGTGATAGCCACAATCTTGACCTTAATTTGGGCATAGCGACTCCAAGACATGAACCCAAAGAAAACAGAGCGTATCACCAGTTTCAGGCTGTTCCTCACAACATGCATCTTGGAAGGAGTTCAAAGATGGAGATTAAGGCTAATTCAGTTATTGGTGACCAGTCTTTGAAAAGGATGGTTGTAACTGAAGAGCATCCTTCCACCTGGAATCATGCCACATACTCCAGTTTCTTTTCCAATGAGGGAAGAAGAGCAGAGAGAATCGGCATTGATCCTTCAAAAGGACTCCCCAACTGGGCGTGGCAAGCACATGGCCAGGGACAGGGTAGTACTGCTTCCCCGGTACAACAATTCTCTTCTGCAGCATCATCAGGATTCTCCATTTCAGCTACCTTTCCATCAAGTTCCATATTTCAAACACAACCATTGAACTCAATTCCACACACACTCTGTTTCGCTCCATCCATTGCACCTGGTAGCTATGCATCTCAATACTATTACCAGGTCAAATCCTCACAAGCTCCCTAG 1410 0.4567 MLDLNLNADSTQNDDSPVLFEKIPEASSGTSNSSIVNADASSSGAGTGTGDEESGSTRAGEAYTFNFGILKVEDGNDVVATKELFPVSVRNLQGQSLAMMFPTRKSEMDLTLDHHGGENGIVQVQQRPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVEYEEDMKQMKNLSKEEFVHILRRHSNGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKAYDKAAIKCNGRDAVTNFEPSTYENEMKTESINEGGSDSHNLDLNLGIATPRHEPKENRAYHQFQAVPHNMHLGRSSKMEIKANSVIGDQSLKRMVVTEEHPSTWNHATYSSFFSNEGRRAERIGIDPSKGLPNWAWQAHGQGQGSTASPVQQFSSAASSGFSISATFPSSSIFQTQPLNSIPHTLCFAPSIAPGSYASQYYYQVKSSQAP 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02464 469 Gene3D AP2/ERF domain 234 278 IPR036955 GO:0003700|GO:0006355
Car01g02464 469 Gene3D AP2/ERF domain 142 201 IPR036955 GO:0003700|GO:0006355
Car01g02464 469 SUPERFAMILY DNA-binding domain 234 278 IPR016177 GO:0003677
Car01g02464 469 MobiDBLite consensus disorder prediction 25 54 - -
Car01g02464 469 CDD AP2 234 279 IPR001471 GO:0003700|GO:0006355
Car01g02464 469 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 439 - -
Car01g02464 469 CDD AP2 143 198 IPR001471 GO:0003700|GO:0006355
Car01g02464 469 MobiDBLite consensus disorder prediction 24 58 - -
Car01g02464 469 ProSiteProfiles AP2/ERF domain profile. 143 199 IPR001471 GO:0003700|GO:0006355
Car01g02464 469 SMART rav1_2 143 205 IPR001471 GO:0003700|GO:0006355
Car01g02464 469 SMART rav1_2 235 283 IPR001471 GO:0003700|GO:0006355
Car01g02464 469 Pfam AP2 domain 143 191 IPR001471 GO:0003700|GO:0006355
Car01g02464 469 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 439 - -
Car01g02464 469 SUPERFAMILY DNA-binding domain 142 199 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02464 Car-Chr1 50360637 50365206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02464 1 469 AP2-EREBP Transcription Factor Family AT5G60120 42.661 2.94e-91 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car01g02464 AP2 2.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02464 K09284 - gmx:100777102 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02464 01 50360637 50365206 Car01g02464 01 50360637 50365206 ECH
Car06g03530 06 66372483 66376181 Car01g02464 01 50360637 50365206 ECH
Car01g02464 01 50360637 50365206 Car06g03530 06 66372483 66376181 PCT