Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02460 ATGGAAGACTCACTCACCGGTTACGAAGACGGCTGGTCAGAGGAAGCCACATTCACACTCATCGACGCCTGGGGCGAACGCTACGTGAAGCTCAACCGCAGCAACCTCCGTAAGAAGCACTGGAAGGAAATTGCAAAAGCCGTCAACGACCGTCACAACCACGTTAAGAAGGCGCGACGCACTAACGTTCAGTGTAAAAACCGAATCGACGCGCTCAAAAAGAAGTACAAGATCGAGAAAGCTAGGGTTTCTGAATCCGGCGATTACGCCGATTACTGGCCGTTTTTCGATGTACTTGATTCCCTAATTGGAGATACTTTCCCGGCAAAGAATCTCTCACCGGTAATTGTACCTCCCGTAAAGGTTCCGACATGGACACCTCCTATGAAGGCTCCGGCATGGGCATTAGCACCGGTTGGTCCTCGATCTCGCAGTCAGAAACGACCGGCTCCAGTGACAACTACATCGGCATCGTTGGAGAGCTTGGAGGAAGAGGAGGAGGGAGAGGACTCGTGTTTTCGACGGAATTTATCTGCCTTTGCTGCGGCGGTTGCTGAAGCAGCGGAGTCAGAGATTGAGAGTTCAGATGGTTTGATCAATGAAAGCAAGAAGTTGAAGAGGGGAATAAATGAAATGGAGTTTGGTGGTATAGAGAAGTTTGGTGAGATATATGAGAGAGTTGAGGAAGAGAAGCAGAGAGAAATGGTGGAGTTGGAGAAACAGAAGATGCAATCTGCAAAGGATTTGGAATATCAGAGCAAAACAACTAAACGTTCCAAaaacatgaatgatccatcagttccttcacaaagcgagttgaatgctcagtctacccaaaaaaacgttagacgtgccacattgttgaaagagttcttagcactaaatcgtattgctggacagaggatatctgtcgaatttgatcaatcgactggaatgccgtcaggggaaaacaagacaaagttcaagagtcatgtggctttcctaggtcgaagcgaagtaagtattttgatagatgaatgggattctgtagatgagaacgtgaagaatcagatttgggcaactatcctgaaaatatgggatattcttaattctgagttcttgaaaaagaaatggatttcatacgctggtgagcgttggagggcatttaagacttgtctgactagtagatatatacatggagatctttgtaacaaatctcctcttgaggtctatgattttcttgatgaggaaacatggcaagcatttattcagaagcgaaaagacccttcctttctggataaaagaaagaaggcacaaatggttcaggtttataataaatgtccccacagattgtctcgtgggggatatgagttgcttaagaagaggatgatgcaagagaaattaaaacaaagcaaagaatcgtcggtagatttagttgctgcacctccatctccactatcacgccatgaaatgtggaagagagcccgacaaaggccgtcaggtgattacacatcagaggatacacgcaaaattgctgagaaaattgattctttggttgaacaaacaactcaaggaacctttgttccacaagggcgtaaagatatcttgacggaagccattggacaacctgagcaccctggtcgtgttcgtggtgttggtcaaggtgtgggcattcgacaatactttggaccacattcacgtaactccaccacacctgttcttagtaatgaacaaataaagaccatgaaagttgagctcactcagcagattaaagagcaattgatgcaagacctgacaactatgggtttttctaagctatacccaaaagtttccacttgttctcctaatgctactgtacatacgagcacaaagggtagttgttctgttgtgacgcctacattagaggaggatgatatcccagaacggtgtgaactgtatgttgataattttcttcatgtggttgcctatggtaatgcatacaagatagggcccaccatacataatcaaatccttgataatgatatggtgaaggtggtggttgatgaggttctagatgcaaatgttcaagtacctatgcccactgacgaggtaaaaactgttgggcaggcccccaacaatttcattcaatggccaaaaagatttatccggattgtttctgataaggatgttgatggatctaagaaagctgacgtttcacccaaaaggtcggaacctcaattagattctgttcaacaattggttttaaaagcgatgaatatgtcaggatctataaggcttgatttggaacacgatgagaccgatattttttggctttcacagagagatattatagagttatgtatgggtaaacaagagttatgcataactattctacaattgtggttgacgtatctacatcgcctttgtattgatgtgggcaagaatgacctgtatggattcattgatccatatttcataaagagtcaacttgatccaactaatgctcaaacatacttacagaaaaagttattcgaggataaaagagagtgctatttagcaccttatcacaacaattgtcattggcaattgctcattatttgtcctaggaagaatactgtagtcttcctctgttcgttaggaagaaaaccggaaaaagatatcattcatattgttgattcagctttgggtgaatgtaataagctgcaaggtattagaaagaagccaatatggtttgtccctgattgccaaagacaatcagagacttatgagtgtggttactatattatgatacatatgttaaatattgtatcagccggtattgttgattcatggttgcgggtaatagaattttttaacatattatattaa 2826 0.1345 MEDSLTGYEDGWSEEATFTLIDAWGERYVKLNRSNLRKKHWKEIAKAVNDRHNHVKKARRTNVQCKNRIDALKKKYKIEKARVSESGDYADYWPFFDVLDSLIGDTFPAKNLSPVIVPPVKVPTWTPPMKAPAWALAPVGPRSRSQKRPAPVTTTSASLESLEEEEEGEDSCFRRNLSAFAAAVAEAAESEIESSDGLINESKKLKRGINEMEFGGIEKFGEIYERVEEEKQREMVELEKQKMQSAKDLEYQSKTTKRSKNMNDPSVPSQSELNAQSTQKNVRRATLLKEFLALNRIAGQRISVEFDQSTGMPSGENKTKFKSHVAFLGRSEVSILIDEWDSVDENVKNQIWATILKIWDILNSEFLKKKWISYAGERWRAFKTCLTSRYIHGDLCNKSPLEVYDFLDEETWQAFIQKRKDPSFLDKRKKAQMVQVYNKCPHRLSRGGYELLKKRMMQEKLKQSKESSVDLVAAPPSPLSRHEMWKRARQRPSGDYTSEDTRKIAEKIDSLVEQTTQGTFVPQGRKDILTEAIGQPEHPGRVRGVGQGVGIRQYFGPHSRNSTTPVLSNEQIKTMKVELTQQIKEQLMQDLTTMGFSKLYPKVSTCSPNATVHTSTKGSCSVVTPTLEEDDIPERCELYVDNFLHVVAYGNAYKIGPTIHNQILDNDMVKVVVDEVLDANVQVPMPTDEVKTVGQAPNNFIQWPKRFIRIVSDKDVDGSKKADVSPKRSEPQLDSVQQLVLKAMNMSGSIRLDLEHDETDIFWLSQRDIIELCMGKQELCITILQLWLTYLHRLCIDVGKNDLYGFIDPYFIKSQLDPTNAQTYLQKKLFEDKRECYLAPYHNNCHWQLLIICPRKNTVVFLCSLGRKPEKDIIHIVDSALGECNKLQGIRKKPIWFVPDCQRQSETYECGYYIMIHMLNIVSAGIVDSWLRVIEFFNILY 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02460 941 Pfam Ulp1 protease family, C-terminal catalytic domain 826 915 IPR003653 GO:0006508|GO:0008234
Car01g02460 941 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 227 911 - -
Car01g02460 941 ProSiteProfiles Ubiquitin-like protease family profile. 762 921 IPR003653 GO:0006508|GO:0008234
Car01g02460 941 Coils Coil 221 248 - -
Car01g02460 941 Pfam Plant transposase (Ptta/En/Spm family) 408 548 IPR004252 -
Car01g02460 941 MobiDBLite consensus disorder prediction 258 279 - -
Car01g02460 941 Coils Coil 55 82 - -
Car01g02460 941 Pfam Myb/SANT-like DNA-binding domain 10 102 IPR044822 -
Car01g02460 941 PANTHER OS10G0338966 PROTEIN-RELATED 227 911 - -
Car01g02460 941 MobiDBLite consensus disorder prediction 137 170 - -
Car01g02460 941 Gene3D Adenoviral Proteinase; Chain A 724 930 - -
Car01g02460 941 MobiDBLite consensus disorder prediction 239 279 - -
Car01g02460 941 Gene3D - 12 78 - -
Car01g02460 941 MobiDBLite consensus disorder prediction 239 257 - -
Car01g02460 941 MobiDBLite consensus disorder prediction 464 500 - -
Car01g02460 941 MobiDBLite consensus disorder prediction 482 500 - -
Car01g02460 941 SUPERFAMILY Cysteine proteinases 757 922 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02460 Car-Chr1 50285608 50290808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02460 7 143 Trihelix Transcription Factor Family AT3G14180 46.853 2.37e-30 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Car01g02460 Peptidase_C48 3.1e-05 CL0125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02460 - - cam:101499726 1837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02460 01 50285608 50290808 Car01g02460 01 50285608 50290808 ECH