Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02459 ATGTATTCCGACTTACACAACAAAGCGTTAACAAGCACTCGCTTTTCTGAACTCAACCCACCACTTTCTGATCTCGTTCTCCAAGCTCTCTCTCACTCAGGTTTCAACTTCTGCACTCCCGTTCAAGCCGCTACCATTCCTTTGCTCTGCACCTACAAAGACGTTATCGTCGACGCCGCCACTGGCTCAGGAAAAACCGTAGCTTTTGTCATTCCACTTGTCGAGATTCTTCGCCGCTCCTCTTCTAATCCCAAACCTCACCAGGTTCTGGGAGTAATTATATCTCCTACAAGGGAACTATCATCCCAAATATATCAAGTTGCACAACCTTTCATTTCAACTTTATCAAATGGTAAGTTGATGCTACTTGTTGGTGGAGTGGATGTAAAAACAGACATGatgaaaattaaggaagaagagagacaaccactctag 435 0.4092 MYSDLHNKALTSTRFSELNPPLSDLVLQALSHSGFNFCTPVQAATIPLLCTYKDVIVDAATGSGKTVAFVIPLVEILRRSSSNPKPHQVLGVIISPTRELSSQIYQVAQPFISTLSNGKLMLLVGGVDVKTDMMKIKEEERQPL 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02459 144 PANTHER RNA HELICASE 26 138 - -
Car01g02459 144 Pfam DEAD/DEAH box helicase 39 137 IPR011545 GO:0003676|GO:0005524
Car01g02459 144 Gene3D - 3 143 IPR027417 -
Car01g02459 144 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 144 IPR014001 -
Car01g02459 144 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 138 IPR027417 -
Car01g02459 144 PANTHER ATP-DEPENDENT RNA HELICASE DDX55 26 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02459 Car-Chr1 50269305 50269739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02459 26 139 Eukaryotic Initiation Factors Gene Family AT5G11200 33.333 2.80e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02459 K14809 - gmx:100801482 225.713