Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02449 ATGGAAATGGAAGATTTTGACCCAATGAGAATTAATGATGGTTTTCAAGGTGTAATTGGAAGTGGGTATGCTTCATCTTCTTCTCTTGTTTTGGATAGGGAAAGGGGAGAACTTGTGGAAGCATCTGTTAAATTGGAACGCAAAGGTGTTTCACCTGAGAGAAGTATTGAAGCTTTGAAGAATCATAGTGAAGCAGAGAGGAGGAGGAGAGCTAGAATCAATGCACATCTTGATACACTTCGTACTGTTATTCCAGGTGCTAATAAGTTGGACAAGGCATCCTTACTAGCTGAGGTCATCACACATTTGAAAGAGCTGAAAATAAATGCAGCAGAAGCAAGTGAAGGATTAATGATACCAAAAGACAATGATGAGATAAGAGTTGAAGAACAAGAAAGTGGATTGAATGGTTTCCCTTATTCAATTAGAGCATCGCTATGTTGTGAATACAAACCAGGTTTATTATCTGATATAAGACAAGCACTTGATGCACTTCATCTTATGATAATAAGAGCAGAGATTGCAACTTTGGGTGGAAGAATGAAGAATGTGTTTGTAATAATTAGCTGCAAAGAACAGAACTTTGAAGACGTCGAGTATCGTCGGTTTCTTGCCGGATCGGTTCACCAAGCTCTTAAATCTGTACTTGATAGATTTTCTGTTTCACAAGATATCTTAGAAAACAGAAAGAGAAGGAGGATTTCTATATTTAGTTCTTCATCTTTAGGAGATTTCTTATAA 741 0.3711 MEMEDFDPMRINDGFQGVIGSGYASSSSLVLDRERGELVEASVKLERKGVSPERSIEALKNHSEAERRRRARINAHLDTLRTVIPGANKLDKASLLAEVITHLKELKINAAEASEGLMIPKDNDEIRVEEQESGLNGFPYSIRASLCCEYKPGLLSDIRQALDALHLMIIRAEIATLGGRMKNVFVIISCKEQNFEDVEYRRFLAGSVHQALKSVLDRFSVSQDILENRKRRRISIFSSSSLGDFL 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02449 246 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 246 - -
Car01g02449 246 SUPERFAMILY ACT-like 145 221 IPR045865 -
Car01g02449 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 57 106 IPR011598 GO:0046983
Car01g02449 246 PANTHER TRANSCRIPTION FACTOR BHLH30 1 246 IPR045847 GO:0003700|GO:0006355
Car01g02449 246 Pfam Helix-loop-helix DNA-binding domain 61 106 IPR011598 GO:0046983
Car01g02449 246 Gene3D - 53 115 IPR036638 GO:0046983
Car01g02449 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 58 114 IPR036638 GO:0046983
Car01g02449 246 SMART finulus 63 112 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02449 Car-Chr1 50183614 50185420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02449 13 235 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 37.395 2.77e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car01g02449 HLH 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02449 - - gmx:100783322 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02449 01 50183614 50185420 Car01g02449 01 50183614 50185420 ECH