Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02440 ATGGGAATGAAGAGCACTGGGGGAGAAATAGTTCAAGTTCAAGGAGGCCACATTGTTAGATCAACAGGTAGAAAAGATAGACACAGTAAAGTCTACACCGCGAAAGGACCTCGCGATCGACGAGTTAGATTATCAGCACATACAGCAATTCAATTCTACGATGTTCAAGATCGTCTCGGCTACGACAGACCGAGTAAAGCTGTTGATTGGCTGATCAAAAAAGCTAAATCAGCTATTGACAAACTTGCTGAGCTTCCACCATGGAATCCAATTCCTAATAATGTCACAGAAGAGTTACAACAGGAAGAAAATAATGCAGGAACAAGGGATATGGTTATTGCAGCAGAAAATTCAGAATCTTCTGGTTACAATTTTCAGCTACAAGACACAGAAAATCACCATAACCATTCAGCTTTCATTCCTTCAAATATTGATACTGATGCAATAGCTTTTTTTCCAACAAGTTCTGCTGCATCATCCATAAACTTTCAAAGCTACCCTTCTGATATAATCTCAAGAACAAACAACTCTATACAGGATCTTGGTCTTTCTCTTCATTCATTCCAAGACCATGGAATGATGCATGGACAATCTCAAGAAGGTGGTAATCATCAAACAGGTTCAAATGACCATCATCAAACACTTTTCACTGATTCAAATCCTGTTGGATTTGAGGCTAATTATCATAGGATTGTGAATTGGAACAATGATGATCACAGAACTGGATTCATGGTTAATTCAGCTCCATTTCTTAGCCAAGGTTCTGCATTTTCCCATAGGGGGACCCTTCAGTCCAGTTTTTCGCAATCGCTTCGTCCTTGGAATGATATTCCGATGGAAACTTCGTCAGTGAATCATAATCAGAAGTCTCAACAGATTCAACAAGCTTCAATCTTTGGTAGCAGATTTCTGTCTGATGCTTTGCCTGGTTTTTGCATTCCAGCTAGAATTCAAGGTGAGGATGAGAGCCATGTTGTTGTTTCGGATAGGCCATCATCTTCTTCTAATTCTCATCATTAA 1020 0.3951 MGMKSTGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLAELPPWNPIPNNVTEELQQEENNAGTRDMVIAAENSESSGYNFQLQDTENHHNHSAFIPSNIDTDAIAFFPTSSAASSINFQSYPSDIISRTNNSIQDLGLSLHSFQDHGMMHGQSQEGGNHQTGSNDHHQTLFTDSNPVGFEANYHRIVNWNNDDHRTGFMVNSAPFLSQGSAFSHRGTLQSSFSQSLRPWNDIPMETSSVNHNQKSQQIQQASIFGSRFLSDALPGFCIPARIQGEDESHVVVSDRPSSSSNSHH 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02440 339 Pfam TCP family transcription factor 23 126 IPR017887 -
Car01g02440 339 MobiDBLite consensus disorder prediction 192 218 - -
Car01g02440 339 PANTHER TRANSCRIPTION FACTOR TCP4 2 339 - -
Car01g02440 339 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 339 IPR005333 GO:0003700
Car01g02440 339 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02440 Car-Chr1 50109880 50112653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02440 8 336 TCP Transcription Factor Family AT3G15030 41.282 2.54e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Car01g02440 TCP 3.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02440 - - gmx:100796390 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02440 01 50109880 50112653 Car01g01999 01 45153723 45155790 ECH
Car01g02440 01 50109880 50112653 Car01g02440 01 50109880 50112653 ECH