Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02439 ATGAATAACTTCGATGACGATCGAAACCATGATGGATATAATAACTTTTATCCATTCGGGAATTCCCATGGTGATCATAACAACGATTTCAACAAAAAAATATTGTTAACCGCCATAGTTTCTTTATCACTAGTATTAATTTTAGTGTTCGCTCTTCATCTCTACGCCAAGTTCATTTTCCGCCGTCAAGCTCGCCGGAGAGCCGCCATTCACCACCTCAGCGTCACCGTAGCTCAAGCTCACGCTCAACTCGCCGAACAGCAAAACACCGGACTCGACCCTTCACTCATCAACTCTCTTCCCACTTTCATCTTCAAAAGAAAACAACACAACCATGTTTCAAATTCCAATGTTGTTGAATGTTCTGTTTGTTTGAGTGTGTTTGAGGATGATGAAATTTTGAGGTTGCTTCCGAAATGTAAGCATAGTTTCCACGTCGGTTGTATTGATACGTGGTTAGCTTCCAAGTCCACGTGTCCGGTTTGTCGAACCAAGGTTGAACCGCGGCTTGAACCGCATCCACGTGAGGGTCCCACTTTGTTTGAATTTGAACCACTTTCGGAAGGTACGTCGGATGGTGGTGTTAGTGGGTCTCCCAAAAATATTTCACGGTTGAGTTCTTTTCGGAGAATTCTTACTAGAGAAAGATCTTCTAGGAGAATCCAACCTTCTAGTGCTTGTGATGATATTGTTCTTCCTCATGATTTAGAGAGACAATAA 720 0.425 MNNFDDDRNHDGYNNFYPFGNSHGDHNNDFNKKILLTAIVSLSLVLILVFALHLYAKFIFRRQARRRAAIHHLSVTVAQAHAQLAEQQNTGLDPSLINSLPTFIFKRKQHNHVSNSNVVECSVCLSVFEDDEILRLLPKCKHSFHVGCIDTWLASKSTCPVCRTKVEPRLEPHPREGPTLFEFEPLSEGTSDGGVSGSPKNISRLSSFRRILTRERSSRRIQPSSACDDIVLPHDLERQ 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02439 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 169 IPR013083 -
Car01g02439 239 SUPERFAMILY RING/U-box 120 171 - -
Car01g02439 239 ProSiteProfiles Zinc finger RING-type profile. 121 163 IPR001841 -
Car01g02439 239 CDD mRING-H2-C3H2C2D_ZSWM2 120 163 - -
Car01g02439 239 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 22 239 - -
Car01g02439 239 PANTHER RING FINGER DOMAIN-CONTAINING 22 239 - -
Car01g02439 239 MobiDBLite consensus disorder prediction 169 202 - -
Car01g02439 239 Pfam Ring finger domain 120 163 IPR001841 -
Car01g02439 239 SMART ring_2 121 162 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02439 Car-Chr1 50105513 50106552 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02439 6 238 C3H Transcription Factor Family AT2G42360 45.817 1.87e-55 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02439 K19038 - gmx:100780265 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02439 01 50105513 50106552 Car01g02439 01 50105513 50106552 ECH