Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02428 ATGGCAACAAACAGATTCGTGTGTGAAATTTGTCTAAAGGGTTTTCAAAGGGATCAAAATCTTCAACTTCATAGACGTGGACATAACCTTCCTTGGAAGCTGAAGCAAAGAACAAGTCAAGAAGTTAGGAAGAGAGTTTATGTGTGTCCTGAGAAGACTTGTGTACACAATCATCCTTCAAGGGCTTTGGGAGATTTAACTGGAATAAAAAAGCACTTTTGTAGGAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAATGCTCAAAGTTTTATGCTGTTCAATCTGATTGGAAAGCTCATTCAAAGACATGTGGTACTAGAGAATACAAATGTGACTGTGGCACTATATTTTCAAGGAGGGATAGCTTTGTAACACACAGGGCATTCTGTGATGCCTTAGCAGAAGAAACAGCTAGAATAAACGGATCAACAAACATAAACAACTCATTGGGAATGGTTAGTAATAATATTGGTTACAGCATCATGCAAACTTCTCTAGCCCCAAGTAATTTTTCTTCAATTTTCAAGCCAATTTCATGCACAAATCAAGAAACATCAAGAGGCCTATCCCTTTGGATGAATCAAACATCTCAAGCTCATGACACAATGACAAATAATAGCAATTTGCATGAGATTCATCCACTTGTTGGAAATGGAAACACACTTGTTTCATGCTCAAACCCACCAAACTCTAATAATTATGAGCTAAATTGGTTGTTTGGAAATAAATTATCTTCCAATAATGGATGTGAAGAGTTAAGTAGCTCTGTTTCACTTCCACTAGTTAATAGTAACATTGATAAGGATAGTTCAAACAACCTTATTAGTGTTCCTTCCTTGTATAGCTCACAACACCAATCTCAAACAACCTTTGCAAACATGTCAGCAACAGCTTTGTTGCAAAAAGCTGCTCAATTTGGGACAACTAATTCAGCTGACCCATTATTACTTGGAAGCTTAGGTATGAGATGCAATAGTACTACTCCAACTCAACAAGATCATGGAAACAAATTTTGTGGAGTGTATGGTTCAGCTTCAGCAGCAGACAAATACTATTCAGGTGAATTGTCACAAATGCCCCCAACAAAACGGCGTCGTGTTCATACTGATGAGACTGTGTGGGGGCAAACTAGGGATTTTCTTGGTGTTGGAGGTGTTAATCATGTGCCATCCTTCATCAATCAAAGGATGGATTTTATTTAA 1203 0.3791 MATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTSQEVRKRVYVCPEKTCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKFYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFVTHRAFCDALAEETARINGSTNINNSLGMVSNNIGYSIMQTSLAPSNFSSIFKPISCTNQETSRGLSLWMNQTSQAHDTMTNNSNLHEIHPLVGNGNTLVSCSNPPNSNNYELNWLFGNKLSSNNGCEELSSSVSLPLVNSNIDKDSSNNLISVPSLYSSQHQSQTTFANMSATALLQKAAQFGTTNSADPLLLGSLGMRCNSTTPTQQDHGNKFCGVYGSASAADKYYSGELSQMPPTKRRRVHTDETVWGQTRDFLGVGGVNHVPSFINQRMDFI 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02428 400 Gene3D Classic Zinc Finger 39 130 - -
Car01g02428 400 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 398 - -
Car01g02428 400 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Car01g02428 400 PANTHER F-BOX ASSOCIATED PROTEIN 1 398 - -
Car01g02428 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Car01g02428 400 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02428 Car-Chr1 50019387 50021854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02428 1 384 IDZ Gene Family AT1G03840 47.672 1.02e-113 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car01g02428 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02428 K25870 - gmx:100778666 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02428 01 50019387 50021854 Car01g02428 01 50019387 50021854 ECH