Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02425 ATGTTTTCTGGGTCGATTCCTGAAGCAATTGGGTCGTTGTATAATCTTGGTGAGTTTGTTGCTAGCCATAATGGTTTTTCTGGTTTGATTCCGAATAGTTTGGTTAATCTAAGCCAATTGGGTAGGCTTGTTCTTAGAGATAATCAACTTTCTGGAGAGATTCCTCAAGGGGTTGGTAATTGGAAGAAGCTCAATGAGCTTGATTTGGCAAATAATAGGCTTTTTGGTAATATTCCAAGTGAATTAGGAACCTTGCCAGGGCTTAATTTTCTTGATCTTTCTGGTAATTGTCTTTCTGGTGAAATTCCAATGGGGCTGCAAAATTTGAAGCTTGATTTTTTCAATTTGTCAAATAATCAGTTTTATGGGGAAATTCCTCCTCTTTATGCTAATGAGAATTATAAGGATAGTTTTGTAGGAAATAGTGGCCTATGTGGTGATATCTCTGGATTGTGTCCAAGATTAGGTGAGAAGGGTAAGAATAGGAAATATGTTTGGGTTTTTAGATTCATATTTGTTCTTACTGGTGTTGTGTTAATTGTTGGTGTGGTCTGGTTTTACTTCAAATTTAGGAATTTGAAGATGATGAATAAAGGTTTTCATTTGTCAAAGTGGAGGTCATTTCATAAACTATGCTTTAGTGAGTTTGAGATTGTTAAATTGATGAGTGAAGATAATGTGATAGGAAGTGGATCTTCTGGGAAGGTCTACAAAGTGGTGCTGAGTAATGGAGAGGTAGTGGCAGTGAAGAAATTGTGGAGAACAACTAAGATAGAAAATGGAAATATTGATACTGAAAAAGATGGATTTGAAGTTGAAGTTGAAACATTGGGAAAGATTAGACACAAGAATATTGTAAGAGGTGTCAGCAATGGGACAGAACCCATGTCTATGATTGCAGGATCTTGTGGTTACATTGCACCAGAATATGCTTACACACTTAGGGTGAATGAAAAGAGTGATATTTATAGCTTTGGTGTAGTGATTTTGGAGTTGGTAACTGGAAAACACCCTATTGATCAGGAATATGGTGAAAAAGGTTTGGTGAAATGGGTTTCTTCCAAATTGAATGAAGAAGGAAAGGATCAAGTTATTGATCCAACTCTTGATTCTAAATACAAGGAAGAAATCAGCAAAGTACTAAATGTGGGGATTATTTGCACAAACTCTCTTCCTATAAACCGTCCTTCAATGCGTAGAGTGGTGAAAATGCTGCAAGAAGTAACAGCAGTTGCAAAATCTAGAAGTGGAAGATTCTCTCCTTACTATCAAGAAGAGGTTTCTGACAATGATCATCAAGAAGCATAG 1308 0.3639 MFSGSIPEAIGSLYNLGEFVASHNGFSGLIPNSLVNLSQLGRLVLRDNQLSGEIPQGVGNWKKLNELDLANNRLFGNIPSELGTLPGLNFLDLSGNCLSGEIPMGLQNLKLDFFNLSNNQFYGEIPPLYANENYKDSFVGNSGLCGDISGLCPRLGEKGKNRKYVWVFRFIFVLTGVVLIVGVVWFYFKFRNLKMMNKGFHLSKWRSFHKLCFSEFEIVKLMSEDNVIGSGSSGKVYKVVLSNGEVVAVKKLWRTTKIENGNIDTEKDGFEVEVETLGKIRHKNIVRGVSNGTEPMSMIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGKHPIDQEYGEKGLVKWVSSKLNEEGKDQVIDPTLDSKYKEEISKVLNVGIICTNSLPINRPSMRRVVKMLQEVTAVAKSRSGRFSPYYQEEVSDNDHQEA 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02425 435 Pfam Protein kinase domain 293 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02425 435 ProSitePatterns Protein kinases ATP-binding region signature. 228 251 IPR017441 GO:0005524
Car01g02425 435 Gene3D Transferase(Phosphotransferase) domain 1 292 434 - -
Car01g02425 435 ProSiteProfiles Protein kinase domain profile. 222 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02425 435 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 2 287 - -
Car01g02425 435 Gene3D Phosphorylase Kinase; domain 1 208 291 - -
Car01g02425 435 SUPERFAMILY Protein kinase-like (PK-like) 224 415 IPR011009 -
Car01g02425 435 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 287 417 - -
Car01g02425 435 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 2 287 - -
Car01g02425 435 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 287 417 - -
Car01g02425 435 SUPERFAMILY L domain-like 2 129 - -
Car01g02425 435 Gene3D Ribonuclease Inhibitor 1 161 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02425 Car-Chr1 50003238 50005275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02425 296 429 Receptor kinase-like Gene Family AT1G28440 66.901 2.06e-56 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Car01g02425 Pkinase 8e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02425 - - cpap:110821948 458.759