Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02421 ATGCTAGCTGTGTCACCATTTATGAGCACAAGAGATGAGAGCCAAAGAGAGATGGAGGAGAATTTATCATCAATCGGAACCGGTGACTTTTTCGATCTTTCCGAAGGGAACTTAATAGAAAGCATCAATTTTGAATTCGACGATGATTTCTTTGTGTGCATCGACGATGGATATGTGTTACCGGATCTGGAAATGGACTCCGATATGCTTGCTGAGTTCTCTCTCAGCGGCGGGGAGGAATCGGAGATGAACTCGTCAGTTACGGGTGCAAATAGAAAATCTTGTAATGATGGAAATATAATTAGTACTATTGAGAAAAAACTACAAGATGAAGAGAAAGTGGTTTCTTCTTCTGATTCGGGTTCGAGCCTTGTGGATGAAATAGTTAGCAAAAGGGATGAATCGGTGGTGGTGAATCCTTTTCCAAAGAAAGATGACAAAGGAAGAAAATCAAAATCTCAATCAAAGAATAATCATCAAGGGAAGAGAAAAGTGAAGGTGGATTGGACCCCAGAATTGCATAGAAGATTCGTACAAGCAGTAGAGCAGCTAGGAGTGGATAAGGCTGTACCATCAAGAATATTAGAAATAATGGGAATTGATTGCCTCACACGCCATAACATTGCTAGCCACCTTCAAAAATATAGATCGCATAGGAAGCATTTGGTAGCACGTGAAGCAGAAGCAGCAAGTTGGAGTCAAAGGAGGCAATTATTTGGAACAAGAAGTAATAGAGGAGTAGGAGGTGGCAAGAGAGATAATCATGATATGAACCAATATTGGGTTGCACCAACCATGGGTTTCCCTCCTCCTATGACACATTTTAGACCTTTACATGTATGGGGGCACCATCCCATGTGGCCTAAACATGTACCATATTCACACCACCACTCACCATCAGCTTGGGCACCTCCACTTTCTGACCCTTCATATTGGCACCAACGGGCTCCTAACACACCAACCGCAGGAACACCATGTTTTCCACAGCCTCTGACAACAACGAGATTTGGCTCTCCAACTGTTCCGGGAATTCCACCACCCCATTCCATCTACCAAGTAGATCCCGGCGTTTGCATACCCGCCGCTGGTCAACCATCTCTTCCGCCTGTTTTAGACTTTCATCCGTCAAAGGAGAGCATAGACGCAGCTATTAGTGATGCATTATCAAAACCATGGTTGCCATTGCCTCTTGGGCTTAAAGCTCCAGCACTTGAAGGTGTGATGGGTGAATTACAAAGACAAGGAATTCCTAATATTCCACCTTCTTGTGCTTGA 1275 0.4376 MLAVSPFMSTRDESQREMEENLSSIGTGDFFDLSEGNLIESINFEFDDDFFVCIDDGYVLPDLEMDSDMLAEFSLSGGEESEMNSSVTGANRKSCNDGNIISTIEKKLQDEEKVVSSSDSGSSLVDEIVSKRDESVVVNPFPKKDDKGRKSKSQSKNNHQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLVAREAEAASWSQRRQLFGTRSNRGVGGGKRDNHDMNQYWVAPTMGFPPPMTHFRPLHVWGHHPMWPKHVPYSHHHSPSAWAPPLSDPSYWHQRAPNTPTAGTPCFPQPLTTTRFGSPTVPGIPPPHSIYQVDPGVCIPAAGQPSLPPVLDFHPSKESIDAAISDALSKPWLPLPLGLKAPALEGVMGELQRQGIPNIPPSCA 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02421 424 MobiDBLite consensus disorder prediction 136 153 - -
Car01g02421 424 Gene3D - 161 222 - -
Car01g02421 424 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 161 220 IPR017930 -
Car01g02421 424 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 424 - -
Car01g02421 424 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 424 IPR044825 GO:0003700|GO:0045893
Car01g02421 424 Pfam Myb-like DNA-binding domain 167 216 IPR001005 -
Car01g02421 424 MobiDBLite consensus disorder prediction 1 22 - -
Car01g02421 424 SUPERFAMILY Homeodomain-like 162 221 IPR009057 -
Car01g02421 424 MobiDBLite consensus disorder prediction 136 165 - -
Car01g02421 424 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 164 218 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02421 Car-Chr1 49961432 49966304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02421 1 329 G2-like Transcription Factor Family AT5G44190 39.216 7.95e-60 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Car01g02421 Myb_DNA-binding 5.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02421 - - gmx:100775671 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02421 01 49961432 49966304 Car01g02421 01 49961432 49966304 ECH
Car06g01998 06 19957621 19964589 Car01g02421 01 49961432 49966304 PCT