Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02419 ATGGCTTCATTATTCAAGGATCAAGCGAAGCTCTCAGCGTATAGAGATAGAAGATTCCCCGGAAATCAAGAAGAATTTGAGCATGCGCTGATAACTTCAACAACCGTTTATGTTGGGAACATGTCGTTTTACACAACGGAAGAGCAAATTTACGAACTTTTTTCACGAGCTGGTGAAATCAAAAAGATCATCATGGGATTGGATAAGAACACCAAAACTCCATGCGGTTTTTGTTTCGTATTATATTACTCTCGTGAAGATACTGAGGATGCTTGCAAATATATAAGTGGGACAATACTGGATGATCGCCCTATTCGTGTTGATTTTGATTGGGGATTCCAGGATGGAAGACAATGGGGTCGTGGTCGTAGTGGGGGCCAGGTGCGTGATGAATATCGCACTGATTATGATCCTGGTAGAGGTGGATATGGAAAGTTGGTTCAGAAAGAGTTAGAAGTACAAAGGCAGCTTGTAGATTATGGTGCTGGTTCTTTGGGATCTTTTCCCCCAGTTATTCCATCTTCTTATGGTAGACATGGTGGTAGCCATGGTCATGGTGGTTCCTATCGGCATGGTAGAGGAGATTACAATAGGAAGAGACACAGAGACGATGATCGCCACACACACGAGCCCTCAAAAAGAACATCAGATCATGAATCTCGGAGGAACCCTGATCATGAATCTCGAAGGAACCCTGACCATGAATCTCGAAGGAACCCTGACCATGAATCTCGGAGGAACTCTGACCATGAATCTAGACCGGAAAAAAATCCACGATTTCGGGAGAGTGGTGATTCTGATGAGGAGGAGGAAGATGATAAAAAAAGACGGGGTTAA 837 0.4373 MASLFKDQAKLSAYRDRRFPGNQEEFEHALITSTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEVQRQLVDYGAGSLGSFPPVIPSSYGRHGGSHGHGGSYRHGRGDYNRKRHRDDDRHTHEPSKRTSDHESRRNPDHESRRNPDHESRRNPDHESRRNSDHESRPEKNPRFRESGDSDEEEEDDKKRRG 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02419 278 CDD RRM_NCBP2 36 113 IPR034148 -
Car01g02419 278 MobiDBLite consensus disorder prediction 173 278 - -
Car01g02419 278 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 1 212 IPR027157 GO:0000339|GO:0005846|GO:0045292
Car01g02419 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Car01g02419 278 SUPERFAMILY RNA-binding domain, RBD 22 144 IPR035979 GO:0003676
Car01g02419 278 PANTHER NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2 1 212 - -
Car01g02419 278 MobiDBLite consensus disorder prediction 124 138 - -
Car01g02419 278 MobiDBLite consensus disorder prediction 188 278 - -
Car01g02419 278 MobiDBLite consensus disorder prediction 120 140 - -
Car01g02419 278 SMART rrm1_1 35 108 IPR000504 GO:0003723
Car01g02419 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Car01g02419 278 Gene3D - 5 150 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02419 Car-Chr1 49925972 49929989 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02419 33 109 Eukaryotic Initiation Factors Gene Family AT1G49760 28.571 6.14e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02419 K12883 - gmx:100789535 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02419 01 49925972 49929989 Car01g02419 01 49925972 49929989 ECH