Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02413 ATGAAGCGTTATGTTTATATTGATGATGATGAATCGTCTCATGATTTTTACTGTGACAATAGAATATCAAATAGAAAATATACTGTGTTGAACTTTCTTCCGAAAAATTTATGGGAACAGTTCAGCCGGTTCATGAATCAGTACTTTTTGCTGATAGCTTGCCTGCAGTTATGGCCTCTCATTACTCCGGTAAATCCTGCCAGTACATGGGGTCCGCTTATCTTTATTTTTGCAGTCTCTGCATCAAAAGAAGCATGGGATGATTATAATAGATATCTTTCAGACAAAAAGGCAAATGAGAAGGAAGTTTGGGTTGTCAGGAAGGGTGTCAAAAAACATATTCAAGCCCAGGATATTCACGTGGGTAATATAGTATGGCTACGTGAAAATGATGAAGTGCCTTGTGACCTTGTTTTGATTGGCACGTCTGATCCTCAAGGAGTTTGCTATGTAGAGACTGCTGCACTGGATGGTGAAACTGATCTAAAGACGCGGGTCATACCTTCTGCTTGCATGGGGATAGATGTTGAACTATTGCACAAAATTAAGGGTGTAATTGAGTGTCCTAGTCCAGATAAAGACGTCAGAAGATTTGATGCAAACATGCGTTTGTACCCCCCATTTATTGATAATGATATATGCCCTTTAACCATTAAAAACACAATTCTTCAGTCATGTTACTTGCGAAATACTGAGTGGGCATGTGGAGTCGCTATATATACAGGCAACGAAACCAAATTGGGTATGAGTAGGGGTATCCCAGAACCAAAGCTCACTGCTATGGATGCCATGATCGACAAATTGACTGGTGCTATATTTGTATTCCAAATTGTTGTTGTTATGGTTCTTGGCATAGCAGGCAATGTGTGGAAGGACACAGAAGCAAGGAAACAATGGTATGTTCTTTACCCTCATGAAGGCCCTTGGTATGAATTATTGATAATCCCTTTGCGGTTCGAGCTTCTTTGTTCCATCATGATACCCATTTCAATTAAGGTATCTCTGGATTTGGTAAAGAGCTTGTATGCAAAGTTTATTGACTGGGACCAACAAATGAGTGACCTAGAGACTAGCATTCCATCCCATGCAGCAAATACAGCGATAAGCGAGGACCTTGGACAAGTTGAGTACATTTTGACGGACAAAACAGGCACCCTGACTGAGAATAAGATGATATTTAGAAGATGTTGTATTAGTGGCATTTCCTATGGAAATGAGAACGGAGATGCATTGAAAGATGTAGAGCTTCTTAATGCTGTTTCAGGTGGTTCTTCTGACGTTATACGATTTCTTACAGTTATGGCTATATGTAATACTGTCATACCTACACGAAGCAAAACTGGAGATATCTTGTATAAGGCACAATCTCAGGATGAAGATGCTCTTGTTCAAGCTGCTGCTCAGCTGCATATGGTTTTCTTCAATAAGAGTGGAAACATTCTTGAAGTCAAGTTCAACACATCTATACTTCAGTATGAAGTCCTGGAAACCTTAGAATTTACCTCTGATAGGAAAAGAATGTCAGTAGTGTTGAAAGATTGCCAAAACGGAAAGATCCTTCTCTTGTCAAAAGGAGCAGATGAGGCTATTCTTCCATATGCTCGTGCTGGGCAGCAAACCCGGCATTTCATTGAAGCTGTGGAGCAATATGCTCACTTGGGATTACGTACACTATGTTTGGCTTGGCGAGAGTTAAAGAAAGATGAATATGAAGATTGGTCTTTGATGTTTAAAGAAGCCAGTAGCACTTTGGTTGATAGAGAGTGGAGAGTAGCTGAAGTCTGCCAAAGAGTTGAACATGACTTGGAAATTCTAGGCGCGACAGCAATAGAGGATCGTTTACAGGACGGAGTTCCTGAAACAATAGAAACACTAAGGAAAGCTGGAATAAATTTTTGGATGCTAACAGGGGACAAGCAGAATACTGCAATACAAATTGCCCTGTCATGTAATTTTATTTCCCCAGAACCGAAGGGACAGCTTCTACTAATTGATGGAAAAACAGAGGATGAGGTTTGTAGAAGTTTAGAGAGAGTGCTTCGTACAATGCGGATAACTACCTCAGAACCCAAGGATGTGGCTTTTGTTGTTGATGGCTGGGCTCTTGAGATTGCACTTAAGCACTACCGTAAAGCTTTCACTGAACTGGCAGTATTGTCAAGGACTGCTATATGTTGTCGTGTGACGCCATCGCAAAAAGCACAGCTTGTACAGATCTTAAAATCATGTGATTATAGAACATTGGCAATTGGCGATGGAGGGAATGATGTAAGGATGATACAACAAGCAGATATTGGAGTTGGAATCAGTGGCAGAGAAGGATTGCAGGCAGCCAGAGCAGCTGATTACAGCATTGGAAAGTTTAGATTCCTGAAGAGATTAATTCTGGTCCATGGCCGGTATTCATACAACCGCACAGCATTTCTTTCACAATACTCATTCTATAAGTCCCTATTGATATGCTTCATCCAAATCTTTTTTTCATTTATATCAGGTGTTTCTGGAACCAGCCTCTTCAATTCTGTTAGCTTGATGGCTTATAATGTTTTCTATACTAGTGTTCCTGTTCTAGTCAGTGTGCTTGACAAAGATCTTAGTGAGGAAACTGTGCTCCAGCATCCTCAAATTTTATTCTACTGCCAAGCCGGAAGGCTTCTAAATCCTAGTACTTTTGCTGGATGGTTTGGGCGATCCCTCTTCCATGCAATAATTGTATTTATAATAAGCATACATGCATATGCCTATGATAAGAGTGAAATGGAGGAGGTTTCAATGGTTGCACTCTCTGGTTGTATATGGTTGCAGGCTTTTGTAATAACAATGGAGACCAATTCCTTTACAATACTGCAACTTCTTGCTATATGGGGTAACTTGGCTGCCTTTTATGTCATCAATTGGATCTTTAGTGCTCTTCCTTCATCAGGGATGTATACAATTATGTTCCGGTTGTGTCGACAACCATCATATTGGATAACAATTTTTCTCATGACTGCAGCCGGGATGGGTCCAATTCTAGCCATCAAGTACTATAGATATACATATAAATCGAGCAAAATCAATACACTTCAGCAGGCTGAACGCCTAGGGGGACCGATTTTGTCTCTTGCCACCATTGAGCATCAGCCCAGATCTATAGAGAAAGATGTTTCTACTTTGTCAATAGCACAACCCAAAAACAGAAATCCAGTATTTGAACCCCTTCTGTCAGATTCTCCAAATTCCACTAGAAGATCTTTTGGAGCAGGAACACCATTCGATTTTTTTCAGCCACAGTCAAGATTATCGTCTAACTACACAAGAAATAGCAAGGACAAGTGA 3318 0.4036 MKRYVYIDDDESSHDFYCDNRISNRKYTVLNFLPKNLWEQFSRFMNQYFLLIACLQLWPLITPVNPASTWGPLIFIFAVSASKEAWDDYNRYLSDKKANEKEVWVVRKGVKKHIQAQDIHVGNIVWLRENDEVPCDLVLIGTSDPQGVCYVETAALDGETDLKTRVIPSACMGIDVELLHKIKGVIECPSPDKDVRRFDANMRLYPPFIDNDICPLTIKNTILQSCYLRNTEWACGVAIYTGNETKLGMSRGIPEPKLTAMDAMIDKLTGAIFVFQIVVVMVLGIAGNVWKDTEARKQWYVLYPHEGPWYELLIIPLRFELLCSIMIPISIKVSLDLVKSLYAKFIDWDQQMSDLETSIPSHAANTAISEDLGQVEYILTDKTGTLTENKMIFRRCCISGISYGNENGDALKDVELLNAVSGGSSDVIRFLTVMAICNTVIPTRSKTGDILYKAQSQDEDALVQAAAQLHMVFFNKSGNILEVKFNTSILQYEVLETLEFTSDRKRMSVVLKDCQNGKILLLSKGADEAILPYARAGQQTRHFIEAVEQYAHLGLRTLCLAWRELKKDEYEDWSLMFKEASSTLVDREWRVAEVCQRVEHDLEILGATAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAIQIALSCNFISPEPKGQLLLIDGKTEDEVCRSLERVLRTMRITTSEPKDVAFVVDGWALEIALKHYRKAFTELAVLSRTAICCRVTPSQKAQLVQILKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGLQAARAADYSIGKFRFLKRLILVHGRYSYNRTAFLSQYSFYKSLLICFIQIFFSFISGVSGTSLFNSVSLMAYNVFYTSVPVLVSVLDKDLSEETVLQHPQILFYCQAGRLLNPSTFAGWFGRSLFHAIIVFIISIHAYAYDKSEMEEVSMVALSGCIWLQAFVITMETNSFTILQLLAIWGNLAAFYVINWIFSALPSSGMYTIMFRLCRQPSYWITIFLMTAAGMGPILAIKYYRYTYKSSKINTLQQAERLGGPILSLATIEHQPRSIEKDVSTLSIAQPKNRNPVFEPLLSDSPNSTRRSFGAGTPFDFFQPQSRLSSNYTRNSKDK 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02413 1105 ProSitePatterns E1-E2 ATPases phosphorylation site. 381 387 IPR018303 -
Car01g02413 1105 Gene3D - 602 790 IPR023214 -
Car01g02413 1105 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 1015 IPR023298 -
Car01g02413 1105 PRINTS P-type cation-transporting ATPase superfamily signature 152 166 - -
Car01g02413 1105 PRINTS P-type cation-transporting ATPase superfamily signature 379 393 - -
Car01g02413 1105 PRINTS P-type cation-transporting ATPase superfamily signature 628 638 - -
Car01g02413 1105 PRINTS P-type cation-transporting ATPase superfamily signature 750 769 - -
Car01g02413 1105 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 386 569 IPR023299 GO:0000166
Car01g02413 1105 MobiDBLite consensus disorder prediction 1066 1080 - -
Car01g02413 1105 Gene3D - 447 579 IPR023299 GO:0000166
Car01g02413 1105 SFLD Haloacid Dehalogenase 364 801 - -
Car01g02413 1105 Pfam Phospholipid-translocating P-type ATPase C-terminal 778 1015 IPR032630 -
Car01g02413 1105 Gene3D - 75 251 - -
Car01g02413 1105 SUPERFAMILY Calcium ATPase, transduction domain A 100 248 IPR008250 -
Car01g02413 1105 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 427 1023 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Car01g02413 1105 SUPERFAMILY HAD-like 374 805 IPR036412 -
Car01g02413 1105 MobiDBLite consensus disorder prediction 1064 1105 - -
Car01g02413 1105 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 12 330 - -
Car01g02413 1105 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 386 1103 - -
Car01g02413 1105 Pfam E1-E2 ATPase 99 291 - -
Car01g02413 1105 CDD P-type_ATPase_APLT 19 906 - -
Car01g02413 1105 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 12 330 - -
Car01g02413 1105 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 386 1103 - -
Car01g02413 1105 SFLD p-type atpase 364 801 IPR044492 -
Car01g02413 1105 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 717 834 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car01g02413 1105 Pfam Cation transport ATPase (P-type) 436 532 - -
Car01g02413 1105 Pfam Phospholipid-translocating ATPase N-terminal 5 70 IPR032631 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02413 Car-Chr1 49848109 49859863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02413 1 1105 Primary Pumps ATPases AT5G44240 85.095 0.0 1998
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02413 K01530 - gmx:100786505 2098.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02413 01 49848109 49859863 Car01g02413 01 49848109 49859863 ECH