Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02412 ATGACTACTATTTGTGaacaacaacaacaacacaaGTTTCATTCTTCCTACCAACCCCTCTCTCCCAAAAAACCTCTCCGTGAAATTGATATCCCACCCAGAAAACTCCTCACCCGCCGTACCGCCGACATGTTTTCCGACGACACAATCCTTCAAAAATTCCTCCCTCACAATGACTCCGATTCCGATTCAGACGATCCCTACTCGTCCGACCATTTTCGGATGTATGAATTCAAAGTCCGGCGATGTACTCGTAGCCGGAGTCACGATTGGACAGACTGTCCATTCGCACACCCCGGCGAAAAAGCACGCCGCCGAGATCCTCGACGGTTTCATTACTCAGGGTCAGTTTGCTCTGAGTATCGCCGCGGTAGCTGTAACCGCGGCGATACATGTGAATTCGCACATGGCGTTTTTGAATGCTGGCTTCATCCAGCAAGATACAGAACTGAAGCTTGCAAAGATGGGAAAAATTGTAAGAGAAAAGTTTGTTTCTTTGCCCACACACCTCGCCAACTTCGAATCCTTCCAGTCACATCTTCAAATTCCAATGATCAATTTTCATGCAACAAGAAAAACAACAAGATTTTGAATAACCATGTTGGTTCAAAAACAAACAATTGTTGTTTGTTTTGTCATTGTAATGGTGCTAATAATTCTCCAACTTCAACACTTTTTGGTATGTCTCATTTCTCGCCGCCGGCGTCACCACCTCTGTCTCCGATGAAACCACGAAATGGGGTTTCTTCAGTTTCATCTCTCGCACGCTACGGTTCAGTGAATAATAGTAATAATCTTCGTTACAGAGACATGCTTGTTGATCTTTTGGGTTCCTTTGAAGGATTGAATTTCAATGAAAATTCTTCATCTTCTTGTTCTTCCCCTGTTTCAAAGATACAGAACAACAACATGGGTTGGCTTGATCTTCCTCTTAACTCTGAAGAACAACAATATCAACAATTTATTGTTTCACcttcttcttcttcttcttTTGATCAGCAACAACAAAATTTTGATATTCATCAGAATTTGATGACACCAAGCTTCAATGATATTGGTGACAATAACATAATTGAAAACAAAATGATGTTTTTGGGAAACGAGAATAATAAGATGGTTGTTGGTGGTGGTGAGGTTAATGCACCTGATCTTGGATGGGTTAATGAGTTGTTGATGTAA 1179 0.4037 MTTICEQQQQHKFHSSYQPLSPKKPLREIDIPPRKLLTRRTADMFSDDTILQKFLPHNDSDSDSDDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGSVCSEYRRGSCNRGDTCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTSSNSNDQFSCNKKNNKILNNHVGSKTNNCCLFCHCNGANNSPTSTLFGMSHFSPPASPPLSPMKPRNGVSSVSSLARYGSVNNSNNLRYRDMLVDLLGSFEGLNFNENSSSSCSSPVSKIQNNNMGWLDLPLNSEEQQYQQFIVSPSSSSSFDQQQQNFDIHQNLMTPSFNDIGDNNIIENKMMFLGNENNKMVVGGGEVNAPDLGWVNELLM 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02412 392 Gene3D - 112 175 - -
Car01g02412 392 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 28 391 - -
Car01g02412 392 PANTHER UNKEMPT FAMILY MEMBER 28 391 IPR045234 -
Car01g02412 392 MobiDBLite consensus disorder prediction 1 27 - -
Car01g02412 392 SMART c3hfinal6 147 170 IPR000571 GO:0046872
Car01g02412 392 SMART c3hfinal6 112 138 IPR000571 GO:0046872
Car01g02412 392 MobiDBLite consensus disorder prediction 1 17 - -
Car01g02412 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 116 137 IPR000571 GO:0046872
Car01g02412 392 ProSiteProfiles Zinc finger C3H1-type profile. 113 139 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02412 Car-Chr1 49840848 49842762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02412 65 174 C2H2 Transcription Factor Family AT5G07500 67.273 4.92e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car01g02412 zf-CCCH 7.7e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02412 K23047 - gmx:100801371 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02412 01 49840848 49842762 Car01g02412 01 49840848 49842762 ECH