Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02410 ATGCCAGCCCAGAAGCGTTCCTTTGCTGAGTCAATGGACGATGAAGATACTTCTCAGAAGCAACTTCAACATTCTCTCCATGTCAaacatcaacccaacaacgaccaacacttcatcgaccaacaacaacacctcgaacaagaagacggtgaagaagacgatgatgaacagcaagagaacgaagatgaggaagatgaacaaggagaagaagaGGGagatgaagaagaggctgaagatgatgatgatgatgatgatgaagatgaagatgaagatgaagatgaagGGAAGAACCACAACGATGACAATGAAAAATCACAGGATTCCGATGAAACCCCTTCTTCTGACTCTGAAGAAAAGCCTGAATATGTGTATGTGGAACTTCAGGATATTCGTAAAGATGTCCAATGTCCAATTTGCCTTGGTATCATTAAGAAAACAAGAACTGTTATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAATCAATGCGTCTGGGGAACAATGAATGCCCTGCTTGCCGCACACACTGTGCAAGCCGTCGCTCATTGAGAGATGATCCAAACTATGATGGCCTTATTGCTACTTTATATCCAAATATTGAGAAATATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGAAATAAGCAGATTCAAGCTTCAATAGCGAAAGTATTTCAACGGCAATCTGAAGCACTGGTTAAGAGGCGTAAGGACACACCAAGCTCATTTGTGACAAGATCACAGCGTAATCAAAGAAACATTCAGTCTAGGAGACCAAACCAAGCTGTTGATATTCAAGGATCTGAAGAAAATGAGGAGGGAAATGGAAATAATGAAAGAGACTCATCTTCTGGCGATGAGCGGGGTACTGAACTCCGACATAGAAGACGAAGGAGGTGGACAAGAGTTCGCCCCTCTCAGCCCTCATCATCAATGGCAAGTCCTGATGGTGGAAGTGTAGACAGTGACGTGGATATAAGTAGAGACAATCGAGGAATTTCAAGGCAGGTGTCAAAACCTAGAAAGCTGACTTGGGGAAGGGGTGGTTTTAGGAGTAACACAAGACATGGCAGTGGTGGTGGTAGCAGCAGCAAAAGCTCCCGCAGCGGTCGAAATGCTAAGATTGTTGATCATCTCAAAAGCTTGAATGAAAACACTGATGAGTTTGATGTTCATGTATTGCTTATTTCTGCGGACAAAGAAACTACACCAAGTTTGGAGCAACTTCACATGTGTTGTCAGCCAACTTTGCCTGTCAACCAACTTTATGAACATGTTGCTAGTCAGACACCGTTGCTGGTTGAAGAAGTTGAGATACTGGCAGTTAAAGGATGCTGCAGTACAAATTCTGACGAGTCCGCTGATGAGAATCCAATCCCGGTTTATGATGACCTCACGTCGGTGGTTATAGATCCGCAAAATGATGAACTAGAAATTTTGCAAGCTCATGAAACTTTGGCAGCGATTAGTTCCAAATGCGTGTTTATAAGGGGACATTCGGTGAGGATTAAGATTCTGGCCTATAGAAGAAAGGTCTAA 1557 0.3809 MPAQKRSFAESMDDEDTSQKQLQHSLHVKHQPNNDQHFIDQQQHLEQEDGEEDDDEQQENEDEEDEQGEEEGDEEEAEDDDDDDDEDEDEDEDEGKNHNDDNEKSQDSDETPSSDSEEKPEYVYVELQDIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDGLIATLYPNIEKYEEEELEFREEEKNRNKQIQASIAKVFQRQSEALVKRRKDTPSSFVTRSQRNQRNIQSRRPNQAVDIQGSEENEEGNGNNERDSSSGDERGTELRHRRRRRWTRVRPSQPSSSMASPDGGSVDSDVDISRDNRGISRQVSKPRKLTWGRGGFRSNTRHGSGGGSSSKSSRSGRNAKIVDHLKSLNENTDEFDVHVLLISADKETTPSLEQLHMCCQPTLPVNQLYEHVASQTPLLVEEVEILAVKGCCSTNSDESADENPIPVYDDLTSVVIDPQNDELEILQAHETLAAISSKCVFIRGHSVRIKILAYRRKV 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02410 518 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 206 IPR013083 -
Car01g02410 518 SUPERFAMILY RING/U-box 122 189 - -
Car01g02410 518 Coils Coil 60 80 - -
Car01g02410 518 SMART ring_2 136 175 IPR001841 -
Car01g02410 518 MobiDBLite consensus disorder prediction 97 119 - -
Car01g02410 518 MobiDBLite consensus disorder prediction 46 96 - -
Car01g02410 518 ProSiteProfiles Zinc finger RING-type profile. 136 176 IPR001841 -
Car01g02410 518 MobiDBLite consensus disorder prediction 1 119 - -
Car01g02410 518 MobiDBLite consensus disorder prediction 8 23 - -
Car01g02410 518 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 1 517 - -
Car01g02410 518 MobiDBLite consensus disorder prediction 328 342 - -
Car01g02410 518 CDD RING-HC_RING1_like 136 176 - -
Car01g02410 518 MobiDBLite consensus disorder prediction 361 376 - -
Car01g02410 518 MobiDBLite consensus disorder prediction 236 378 - -
Car01g02410 518 Pfam Zinc finger, C3HC4 type (RING finger) 135 175 - -
Car01g02410 518 MobiDBLite consensus disorder prediction 249 278 - -
Car01g02410 518 PANTHER OS11G0578200 PROTEIN 1 517 IPR044592 -
Car01g02410 518 Coils Coil 202 225 - -
Car01g02410 518 MobiDBLite consensus disorder prediction 279 299 - -
Car01g02410 518 ProSitePatterns Zinc finger RING-type signature. 152 161 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02410 Car-Chr1 49826387 49834133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02410 128 199 C3H Transcription Factor Family AT3G23060 33.333 4.88e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02410 K10695 - gmx:100776547 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02410 01 49826387 49834133 Car01g02410 01 49826387 49834133 ECH