Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02409 ATGTTACTCTGTATAAGTCCAAGATTTCAGTGTTATATTCACTCTTGTTTCCATTTCTTAATATACTTATTTGCTACTTGTATGTCTTGCTGCATACAGCTTGGAGCTTTTTCATCTCAAGTACTGCAAGATTCGTCGCATGATAAGACATGGAGAAGAAAACATTCTCTGATGCATGACATGGAGAAACATTGCAATGCTGAAATTTCTGCAAAGGTTTCACACTTGCCATCATCACAAAAAGATGGCGAGCATGATCATTTTACACTAGAAGGGTTAATGGAGAGTCCCTCGGTGGATGGCGACAGGGACTGCTTGTCACCATTACTATTAAATGCAACTTCTGTTAAAGTTGAGGTCTACTATAACAAAGCAGTGAACTATACCTTGATGGTTACTTTTGTCTCATTTTTGCAAGTTCTTCTATTGATTCGTCAAATGGAGCATAGCGGCACTCAATCTGGGGCTGCTAAGGTTTCAATATTAATGATTGGCCAACAGGCGATAATGGATGCCTATCTTTGCCTCTTACATCTGACTGCGGGAATACTAGTCGAATCCTTGTTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTCGTGGTCTTCTCAATATTTGAGATGAGATATCTACTTGGCATCTGGAAGGCCGGTAGGCCTTTGAGTAACGGCGAAGGCTGGGAGACTATGAGGCGTGAACTTTCAGCTTTATACAGTCGTTTCTATGGGATACTGTTAGGAGGCATTCTACTTGTGTATGAGTTCCATAATCATTTGAAACCAGTTCTTCTTCTTATGCACTCCTTTTGGATACCTCAGATAATCAGTAATGTTATCCGTGATTCACGCAAACCCTTGCATCCTCATTATACATTAGGGATAACTGTTACTCGGCTAGCAATCCCATTATATGTATTTGGTTGCCCTAACAACTTCATGCGCATAGAACCCGACAAGAGCTGGTGTGTTTGTTTGTCTGTATTTGTCGTGCTTCAAGCTGTGGTTGTTCTCCTTCAGCACTATCTTGGATCGCGCTGGTTCATTCCTCGACAGATTCTACCTGAGAAATACAGCTATTGTAGGATGTTTGATCATGATACAAGACATGCTACAGACTGTGTCATTTGCATGACAGCCATTGATCTTTCCCGAAGAACAAATGACTGCATGGTGACACCTTGTGATCATTTCTTCCACTCTGGTTGTTTACAAAGATGGATGGATATAAAGATGGAGTGTCCAACTTGTCGTCGCACTTTACCACCTGCTTAA 1272 0.4096 MLLCISPRFQCYIHSCFHFLIYLFATCMSCCIQLGAFSSQVLQDSSHDKTWRRKHSLMHDMEKHCNAEISAKVSHLPSSQKDGEHDHFTLEGLMESPSVDGDRDCLSPLLLNATSVKVEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSGTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLGIWKAGRPLSNGEGWETMRRELSALYSRFYGILLGGILLVYEFHNHLKPVLLLMHSFWIPQIISNVIRDSRKPLHPHYTLGITVTRLAIPLYVFGCPNNFMRIEPDKSWCVCLSVFVVLQAVVVLLQHYLGSRWFIPRQILPEKYSYCRMFDHDTRHATDCVICMTAIDLSRRTNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRTLPPA 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02409 423 SUPERFAMILY RING/U-box 355 421 - -
Car01g02409 423 SMART ring_2 373 416 IPR001841 -
Car01g02409 423 SMART ringv_2 372 417 IPR011016 GO:0008270
Car01g02409 423 PANTHER RING ZINC FINGER PROTEIN 34 423 - -
Car01g02409 423 ProSiteProfiles Zinc finger RING-type profile. 373 417 IPR001841 -
Car01g02409 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 359 423 IPR013083 -
Car01g02409 423 PANTHER TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 34 423 - -
Car01g02409 423 Pfam Ring finger domain 372 417 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02409 Car-Chr1 49817581 49822747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02409 368 423 C3H Transcription Factor Family AT2G35420 35.714 3.70e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02409 K23788 - gmx:100780140 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02409 01 49817581 49822747 Car01g02409 01 49817581 49822747 ECH