Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02404 ATGGGTTGCATAAGTTCCAAGAGTTCAGCTGTGGATGACAGCAAGGAAGGTTTGACAAAGGACTTGAGGTCATCTAGCAAAAGAATCTCTACGATGAAGGTTTCAAGATTGGATAAGAAAAGGGCTGATGGAGTTTTGGAGAAAGATGATATTTTGGATGGTATTGGCATGAAAGTTTCATTGATTGATAAGGAGGCCAATAATGGTTCAGTGTGCTTGTATGATGATCAGAGTGTGAAGATGGAAATGGAGAAACCtgaattgaatgtgaagatggaaatggagaaacctgaattgaatgtgaaGATGGAAATGGAGAAACCTGAATTGGGTGCTGTTGTTGTTGATTGTCCTCCTGGTGTTGGAAGGGTTCCAAAGGCGTTAGAAGGAGAGCAAGTTGCAGCTGGATGGCCAACTTGGCTTTCTTCTGTTGCTGGTGAAGCTATCAATGGATGGATTCCGCGGAGTGCAAATACTTTTGAGAAGTTTGATAAAATTGGCGAAGGAACTTACAGCACTGTTTATAAGGCACACGATTTGATTAACCAAAAGGTCGTTGCCTTGAAGCGGGTGCGCTTTGATAGTCTTGATCACGAGAGTGTCAAGTTTATGACAAGGGAAATCATTTTTCTGCGTAGACTTGACCATCCAAATGTAATTAAGTTGGAGGGTTTGATAACATCGCAGACGTCTCGCAGCTTGTACCTTGTTTTTGAATATATGGAACACGATCTTACAGGACTTGTGTCAGCACCTTACATTAAGTTTTCTGAACCACAGATTAAATGCTACATGCAGCAGCTTCTTAGTGGATTGGATCATTGCCATAGTCGTGGTGTTCTCCACCGTGATATAAAGGGCTCAAATCTTCTCATTGACAATAATGGCATTTTAAAGATTGCAGATTTTGGTTTGGCTAACTTTTTTGACCCTCATCAAAGTGTTAAATTGACCAGCCGCGTAGTAACTCTGTGGTATAGACCACCAGAACTTTTACTTGGATCATCAAATTATGGAGTTGCAGTGGATATGTGGAGCACTGGTTGCATACTGGGTGAACTATACTGTCGCAGGCCAATATTGCCTGGAAAAACAGAGGTTGAGCAATTGCATAAGATTTTTAAACTTTGTGGATCACCATCTGTGGACTATTGGCGTAAACTGCGGTTGCCCCATTCTGCAGTATTCAGGCCTCCACACCATTATAGGAACTGTCTTAAAGATACATTTAAAGAATTTCCACCTGCTGCTGTTAGGCTTATAGAGACCCTACTCTCTTTAGATCCTACGCTTCGAGGAACAGCAGCTACTGCTCTAAAGAATGAGTTCTTTTCATTGGAACCTCGTGCTTGCGATCCATCAACTTTGCCAAAATATCCTCCTAGCAAAGAGATCAACACTAAAATGGGGGAAGGATCAACAAAAAGGCAAGGAGCACTTAGAGGAAAGGAGCAAAGAGTTGGGCCACGAGTTAGACAAGAGAAAGAATCTCAGTCATTCGTCTTATCCAAAGCCGATGCTGACTCCCGCATATCAATGCAGCGAGGGCAACACTTTCCGAATATGACAAGCCAGAATGAATTGTTCAACCTTCATAGAGAACCTGTATCCAGATTTGTGGGTTCACCACACAAACAGTCAGAAGATGCTAAAGAAATGGTCAATTATTTCTCTGGGCCTCTTTATCAGAGACCTTCACATTCAGGTTTACTGGTTCCAGGTTCGGGTCTGCACAAAGTTGGAAACGAAGCTGCTGAGTGGCTGCCACATGCTTCAAATAAAGTCAACCTACCGAAACCATCTAGGACTTCGTTGTCTGGAAATCAAAAAGAAAATCCAGCTCTCTCAAGGCCCCGAGATACACTTCAAGCACACAAATATTTGGGGTTGAGTAATGGCTCAGAGTCAAGAAGGCAGCATGATAAAAAACACCATTCTCAGATAATTGATATCATCCAAACAGAAAATGGAAAGGACGGGCATGCATCTAGCGAAAACAAGATCTATATGTCTGGTCCATTACTGGTTTCATCGAACAATATGGATCAGATGCTCAAAGAACACGAACGGAGGATCCAAGAATATTCACGACGAGCCAGAATTGATAGGTCTAAAGGTGAAAGTATGATCACAGCAAAATTAGGATGA 2148 0.4129 MGCISSKSSAVDDSKEGLTKDLRSSSKRISTMKVSRLDKKRADGVLEKDDILDGIGMKVSLIDKEANNGSVCLYDDQSVKMEMEKPELNVKMEMEKPELNVKMEMEKPELGAVVVDCPPGVGRVPKALEGEQVAAGWPTWLSSVAGEAINGWIPRSANTFEKFDKIGEGTYSTVYKAHDLINQKVVALKRVRFDSLDHESVKFMTREIIFLRRLDHPNVIKLEGLITSQTSRSLYLVFEYMEHDLTGLVSAPYIKFSEPQIKCYMQQLLSGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLANFFDPHQSVKLTSRVVTLWYRPPELLLGSSNYGVAVDMWSTGCILGELYCRRPILPGKTEVEQLHKIFKLCGSPSVDYWRKLRLPHSAVFRPPHHYRNCLKDTFKEFPPAAVRLIETLLSLDPTLRGTAATALKNEFFSLEPRACDPSTLPKYPPSKEINTKMGEGSTKRQGALRGKEQRVGPRVRQEKESQSFVLSKADADSRISMQRGQHFPNMTSQNELFNLHREPVSRFVGSPHKQSEDAKEMVNYFSGPLYQRPSHSGLLVPGSGLHKVGNEAAEWLPHASNKVNLPKPSRTSLSGNQKENPALSRPRDTLQAHKYLGLSNGSESRRQHDKKHHSQIIDIIQTENGKDGHASSENKIYMSGPLLVSSNNMDQMLKEHERRIQEYSRRARIDRSKGESMITAKLG 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02404 715 Coils Coil 678 705 - -
Car01g02404 715 ProSiteProfiles Protein kinase domain profile. 160 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02404 715 MobiDBLite consensus disorder prediction 477 501 - -
Car01g02404 715 Gene3D Transferase(Phosphotransferase) domain 1 243 481 - -
Car01g02404 715 MobiDBLite consensus disorder prediction 1 30 - -
Car01g02404 715 MobiDBLite consensus disorder prediction 13 30 - -
Car01g02404 715 CDD STKc_CDK9_like 160 444 - -
Car01g02404 715 Pfam Protein kinase domain 160 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02404 715 ProSitePatterns Protein kinases ATP-binding region signature. 166 189 IPR017441 GO:0005524
Car01g02404 715 Gene3D Phosphorylase Kinase; domain 1 147 242 - -
Car01g02404 715 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
Car01g02404 715 SMART serkin_6 160 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02404 715 MobiDBLite consensus disorder prediction 591 622 - -
Car01g02404 715 PANTHER CELL DIVISION PROTEIN KINASE 107 702 - -
Car01g02404 715 SUPERFAMILY Protein kinase-like (PK-like) 153 445 IPR011009 -
Car01g02404 715 PANTHER CYCLIN-DEPENDENT KINASE 107 702 - -
Car01g02404 715 MobiDBLite consensus disorder prediction 596 616 - -
Car01g02404 715 MobiDBLite consensus disorder prediction 455 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02404 Car-Chr1 49779260 49784307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02404 152 487 Core Cell Cycle Gene Families AT5G10270 47.009 2.05e-102 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Car01g02404 Pkinase 7.8e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02404 - K08819 gmx:100781209 956.822
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02404 01 49779260 49784307 Car01g02404 01 49779260 49784307 ECH
Car01g02404 01 49779260 49784307 Car06g02025 06 20223061 20228044 PCT