LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car01g02401	ATGGAGCCTTTGCTCAGAGGCGAAAACAGTGGCCCCAGAAACCGTTCCAAAAGAATATTCCGCCGCACCGATGCTTTCACCTACGGCTCCAATTACGAAAAAGCCGCCGCACTCGTCGATCTGGCTGAAGATGGTGTTGGTATACCCGAGCAAATTCTGGACTCATCAAGCTTTCAAAGTTATGCAAGATATTATTTTATGTTTACTAAATGCAACCTCATCTGGTCTCTTAGTTATTTTGCTTTGATAGTCCTGAATTTCCTGGAGAAACCTCTATGGTGTGAAAAGAATACCCTACATTCTTGCAAAGATAGGGAATATTTCTTTTTGGGGGAGTTGCCATATCTAACTGCCGcagagtgtcttatttatgagGGAATAGTCCTTATTTTGCTAATCATTCATACCCTCTGGCCATTATCATACGAAGGATCCCAAATATATTGGAAAAATGCTATTAATCTATTAAAGGCGTTCTGTCTGTTAGTAATCATTGCTGATATGCTGGTTTATGCTCTGTATATGTCTCCATTGGCTTTTGATTATCTACCTTTCAGAATTGCACCTTATGTCAGAGTTATTCTTTTCGTTCTGAATATAAGGGAGCTACGAGAAACCATCATCATCTTGGTTGGAATGCTTGATACATACTTAAATATCTTGGCTTTGGGGCTTCTGTTTCTTGTTTTTGCAAGTTGGGTGGCTTATGTGATTTTTGAAGATACAATACAGGGGAAAACAGTGTTCACTTCCTATAGTGCTACGTTATATCAGATGTTTCTTTTATTTGCCACAGCCAATAACCCAGATGTTTGGGTTCCTGCATACAAGTCTTCGCGATGGCATTGCTTGTTTTTCATTCTGTTTGTGCTGGTGGGAGTCTACTTTGTTACAAACTTGATCCTTGCCGTTGTTTACGATAGTTTCAAGAGTGAGCTTGTAAAACGAGTTTCTGAGATGGATCGTATGAGAATAACTATGTTGGAGAAAGCTTTTAAACTCCTAGATACACATAATGTTGGATGTCTCAACAAAGATCAATGCATTGGGCTCTTCGAGGAAGTGAACAAGTACAGGACTTTGCCAAAAATCTCCAAGGAAGAATTTGAGTTGATATTTGATGAGCTGGATGACACTCATGATGTAAAGATCAACAAGGATGAATTTGCTGATATTTGCAATGCCATTGCTTTAAAATTCCAGAAGGAGGATGCGCTTTCTTACTTTGACTATTTAGAATTCTACCATTCACCCACCTCAAAGAGATTGAAAGTCTTCGTAAAGAGCCCTATGTTTGGATACATAGTGTCCTTTGTACTCATAGTGAATCTGGTTGCTGTAATCATTGAGACAACGCTTGATATAGAAAACAACTCTGGTCAAAAGGTGTGGCAAGTGGTCGAGTTTGTTTTTGGGTGGATATATGTACTTGAAATGATTCTAAAGGTTTATTCATATGGATTCGAAAATTATTGGCGGGATGGTCAAAATCGCTTTGATTTTGTAATCACGGTGATAATTGTTATTGGAGAAACTATAACTTTTGCTTTACCTGATGATCGTGTACCATTTATCTCAAATGGGGAATGGATTCGTTACCTCCTTCTTGCAAGAATGTTGAGATTGATAAGACTTCTAATGCATGTCAAGCGATTCCGAGGTTTTGTGGCAACTTTCTTATCTCTTATACCGAGTTTGATGCCATACCTCGGGACCATATTTTGCGTCTTGTGTATTTATTGCTCAATTGGTGTCCAGATTTTTGGTGGACTAGTTAATGCTGGAAACCCAGATTTGGAAGCAACAGACCTTGCTGTTAATGACTATTTACTTTTTAATTTCAATGATTATCCAAATGGAATGGTGACACTATTCAATTTGCTAGTCTCAGAGATCTGGGAAGAATTGATGGAGAGCTACAAGGATTTAACTGGAACTTCTTGGACCTATGTGTACTTCATTAGCTTCTACTTAATTACTGTTTTGCTGCTTTTGAATTTGATTGTTGCTTTTGTCTTGGAGGCATTCTTTGCTGAAATGGAGGTGGAGTCATCAGAAACTTGTGATGGAAATGACAAGGAAATTGAAGGAGATAGATATCGGGGGCGGCGATCTATTGGAACAAAATCACGAAGCCAGAGGGTTGCTGTTCTTCTTCATCATATGCTGAGTGCTGAGCTGAGTCAAAATCAACCTTCCAATACATAA	2208	0.3845	MEPLLRGENSGPRNRSKRIFRRTDAFTYGSNYEKAAALVDLAEDGVGIPEQILDSSSFQSYARYYFMFTKCNLIWSLSYFALIVLNFLEKPLWCEKNTLHSCKDREYFFLGELPYLTAAECLIYEGIVLILLIIHTLWPLSYEGSQIYWKNAINLLKAFCLLVIIADMLVYALYMSPLAFDYLPFRIAPYVRVILFVLNIRELRETIIILVGMLDTYLNILALGLLFLVFASWVAYVIFEDTIQGKTVFTSYSATLYQMFLLFATANNPDVWVPAYKSSRWHCLFFILFVLVGVYFVTNLILAVVYDSFKSELVKRVSEMDRMRITMLEKAFKLLDTHNVGCLNKDQCIGLFEEVNKYRTLPKISKEEFELIFDELDDTHDVKINKDEFADICNAIALKFQKEDALSYFDYLEFYHSPTSKRLKVFVKSPMFGYIVSFVLIVNLVAVIIETTLDIENNSGQKVWQVVEFVFGWIYVLEMILKVYSYGFENYWRDGQNRFDFVITVIIVIGETITFALPDDRVPFISNGEWIRYLLLARMLRLIRLLMHVKRFRGFVATFLSLIPSLMPYLGTIFCVLCIYCSIGVQIFGGLVNAGNPDLEATDLAVNDYLLFNFNDYPNGMVTLFNLLVSEIWEELMESYKDLTGTSWTYVYFISFYLITVLLLLNLIVAFVLEAFFAEMEVESSETCDGNDKEIEGDRYRGRRSIGTKSRSQRVAVLLHHMLSAELSQNQPSNT	735

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car01g02401	735	Gene3D	-	310	393	-	-
	Car01g02401	735	SUPERFAMILY	EF-hand	317	412	IPR011992	-
	Car01g02401	735	Gene3D	-	202	309	-	-
	Car01g02401	735	Gene3D	-	421	556	IPR027359	-
	Car01g02401	735	PANTHER	TWO PORE CALCIUM CHANNEL PROTEIN 1	2	732	IPR044581	GO:0005245
	Car01g02401	735	SUPERFAMILY	Voltage-gated potassium channels	429	676	-	-
	Car01g02401	735	Gene3D	-	557	708	-	-
	Car01g02401	735	Pfam	Ion transport protein	127	311	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Car01g02401	735	Pfam	Ion transport protein	430	677	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Car01g02401	735	ProSiteProfiles	EF-hand calcium-binding domain profile.	364	399	IPR002048	GO:0005509

Showing 1 to 10 of 10 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car01g02401	1	735	Ion Channels	AT4G03560	67.120	0.0	1031

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car01g02401	K16900		-	gmx:100806160	1219.91

Showing 1 to 1 of 1 entries

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car01g02401	01	49721899	49746099	Car01g02401	01	49721899	49746099	ECH

Showing 1 to 1 of 1 entries