Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02396 ATGGCCCTAAATCAGTATTTTGAGGAGGGTGTTCCTCAAAGAAATTCCTTGGAAGATAAATCATCTCAGGAAATGTGGAAATGTGGCAGTGCTGAAGCTATTTCAGGTTCTAGTGGCTTTGACTGCAACATATGCTTAGATTGTGTGCAAGATCCAGTGGTTACTCTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTTAATTTCCATGGCGAAAACAAAGAGAAGCAGAAGAATAAGCCACAATGTCCAGTATGCAAATCAGATATTTCACAGTCATCCATTGTTCCGCTCTATGGCCGAGGCCTAACCACACCACCATCCAAAGACCATGCTCACCAAATAGGGAATGTCACACCACCAAGACCCCTTGCTCCTTCTTGGATGACTAACTTACCGAGATCGCTTGAAGCAGCAAATGTTTCACAACATACTTCTCAGGTTTATCATCCTCATTATCTTAACCATTCTCAACAATACACTTCACCAATGCTTGACACAAGTGGTTCACTTACCAATGCATTGAATACAACTTATGGCGTCTTTGGTGAAATGATTTATGCAAGGATCTTTGGAAACCAAGTAACAAACATATATACATACCCGAATTCATACAATCTTTCAGGGATCAGTAATCCAAGGATCAGAAGGCATTTGATGCGAGCTGATAAGTCGCTCAGTAGAATCTGTTTCTTCCTCCTCTGTTGCACAGTTTTGTGTCTTCTCTTGTTCTGA 744 0.4153 MALNQYFEEGVPQRNSLEDKSSQEMWKCGSAEAISGSSGFDCNICLDCVQDPVVTLCGHLYCWPCIYKWLNFHGENKEKQKNKPQCPVCKSDISQSSIVPLYGRGLTTPPSKDHAHQIGNVTPPRPLAPSWMTNLPRSLEAANVSQHTSQVYHPHYLNHSQQYTSPMLDTSGSLTNALNTTYGVFGEMIYARIFGNQVTNIYTYPNSYNLSGISNPRIRRHLMRADKSLSRICFFLLCCTVLCLLLF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02396 247 SMART ring_2 42 89 IPR001841 -
Car01g02396 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 247 - -
Car01g02396 247 SUPERFAMILY RING/U-box 38 102 - -
Car01g02396 247 Pfam RING-type zinc-finger 42 87 IPR027370 -
Car01g02396 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 159 IPR013083 -
Car01g02396 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 247 IPR045103 GO:0005783|GO:0006511|GO:0061630
Car01g02396 247 CDD RING-HC_AtRMA_like 40 91 - -
Car01g02396 247 ProSiteProfiles Zinc finger RING-type profile. 42 90 IPR001841 -
Car01g02396 247 ProSitePatterns Zinc finger RING-type signature. 57 66 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02396 Car-Chr1 49684841 49687583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02396 34 247 C3H Transcription Factor Family AT4G28270 37.727 8.14e-45 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02396 K10666 - gmx:100785491 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02396 01 49684841 49687583 Car01g02396 01 49684841 49687583 ECH
Car06g02028 06 20252454 20259758 Car01g02396 01 49684841 49687583 PCT