Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02391 ATGAAGCACCACCGTGTCTCCGCCCTGTTTCTTTTAAGCCTCGGCTTTATACTTGCGCAGGGACAGCTTCAGCACCGTGTCGTCCTCGACCCACATTGGTACCCAGGAACTGCCACTTGGTACGGCGAGCCTGAGGGAGACGGTAGCACAGGAGGGGCGTGTGGTTATGGAACGTTGGTGGACGTGAAGCCGTTGAAGGCAAGAGTAGGAGCGGTGGGACCCAGGCTGTATAGGAGTGGAGAAGGGTGCGGTGAGTGTTATAAGGTGAAATGTTTGGACCAGAGCATATGTTCGAAGCGGGCAGTGACGGTTATAATAACGGATGAGTGCCCGGGCTGCCCGTCTGACCGAACACATTTCGACCTTAGTGGTGCTGCTTTTGGTCGCATGGCTTTTTCCGGCGAGAATGGTCAACTCAGGAATAGAGGTGAAATCCCAGTTATTTACCGAAGAACATCATGCATATATGGTGGCAAAAATATTGCCTTCCAAGTTAATGAAGGTTCCACACCTTATTGGTTGTCACTTCTGGTGGAGTTTGAGGATGGAGATGGTGACATAGGCTCCATGCATATACAAGAAGCTGGGTCTAGTGAGTGGTTGCAAATGAATCATCTATGGGGAGCAAATTGGTGCATTGTTGCGGGGCCTTTGAAAGGACCTTTCTCTGTGAAACTAAGCACATCCACAGGGAGAAGCCTAACTGCCAAAGATGTTATTCCAAGTAATTGGTCTCCAAAAGCCACTTATGCTTCTCGCTTAAATTTCTCTCCTTAA 777 0.4942 MKHHRVSALFLLSLGFILAQGQLQHRVVLDPHWYPGTATWYGEPEGDGSTGGACGYGTLVDVKPLKARVGAVGPRLYRSGEGCGECYKVKCLDQSICSKRAVTVIITDECPGCPSDRTHFDLSGAAFGRMAFSGENGQLRNRGEIPVIYRRTSCIYGGKNIAFQVNEGSTPYWLSLLVEFEDGDGDIGSMHIQEAGSSEWLQMNHLWGANWCIVAGPLKGPFSVKLSTSTGRSLTAKDVIPSNWSPKATYASRLNFSP 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02391 258 PRINTS Major pollen allergen Lol pI signature 109 124 IPR005795 GO:0005576|GO:0019953
Car01g02391 258 PRINTS Major pollen allergen Lol pI signature 131 146 IPR005795 GO:0005576|GO:0019953
Car01g02391 258 PRINTS Major pollen allergen Lol pI signature 163 178 IPR005795 GO:0005576|GO:0019953
Car01g02391 258 PRINTS Major pollen allergen Lol pI signature 179 194 IPR005795 GO:0005576|GO:0019953
Car01g02391 258 PRINTS Major pollen allergen Lol pI signature 208 225 IPR005795 GO:0005576|GO:0019953
Car01g02391 258 PRINTS Major pollen allergen Lol pI signature 228 245 IPR005795 GO:0005576|GO:0019953
Car01g02391 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 159 IPR007112 -
Car01g02391 258 PANTHER EXPANSIN-LIKE PROTEIN B1 18 258 - -
Car01g02391 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 252 IPR007117 -
Car01g02391 258 SUPERFAMILY PHL pollen allergen 159 252 IPR036749 -
Car01g02391 258 SMART dpbb_1 69 149 IPR007112 -
Car01g02391 258 Gene3D - 156 257 IPR036749 -
Car01g02391 258 PANTHER EXPANSIN-B3 18 258 - -
Car01g02391 258 Pfam Lytic transglycolase 72 148 IPR009009 -
Car01g02391 258 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Car01g02391 258 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Car01g02391 258 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Car01g02391 258 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Car01g02391 258 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Car01g02391 258 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Car01g02391 258 Pfam Expansin C-terminal domain 161 241 IPR007117 -
Car01g02391 258 Gene3D - 19 154 IPR036908 -
Car01g02391 258 SUPERFAMILY Barwin-like endoglucanases 28 158 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02391 Car-Chr1 49659309 49662299 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02391 25 194 Expansin Gene Family AT4G28250 74.118 2.52e-91 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02391 K20628 - gmx:100780112 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02391 01 49659309 49662299 Car01g02391 01 49659309 49662299 ECH
Car01g02391 01 49659309 49662299 Car06g03146 06 57522452 57526176 PCT