Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02374 ATGGTAGTAATTGGGCAGCAGGAGATTGAGGATCGAAACGCGAATCCCTCCAACGCCGGTACAAACAACGATGCTTCCGACGGCTTTGAAACCGCCAGTGATACCGATCTTGGCAGCGACGGCGACGGTAATGACGGCGGAACAATCAAAGAGGAAAAACAGGAGCATCCTCAGCAACAGCAGGAGAAGAGTGATCCTGGAAGAATCATTTCCTCCGACGAGGCTTCGATCGACGATGAGGAATTGAAACAGGTAGCATTGGTTCAAGCAAATGAAGCAAAGGTAGAAGGGAACAAACTTTTTGTAGATGCAAAGTATGAAGAGGCGCTATCACAATATGAACTGGCTTTACAAGTTGCGCCAGACATGCCTTCTTCTGTGGAAATACGCTCAATATGCCATGCAAACCGTGGTGTGTGCTTTCTGAAAATGGGAAAATATGAAAACACAGTTAAAGAGTGCACTAAAGCATTAGAATTGAATCCAACATATGTCAAAGCTTTGGTAAGAAGAGGAGAGGCCCATGAAAAGCTTGAGCATTTTGAAGAAGCCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTGGGAAAACCATTCGCCGATTGGAGCCCCTTGCTGCAGTAAAACGGGAAAAGATGAAAGAAGAAATGATTGCAAAACTGAAAGAAATGGGCAACTCTCTCTTGGGTCGCTTTGGGATGAGCGTTGACAACTTTAAAGCAGTCCAAGATCCAGCCACTGGTTCCTATTCTGTCAAATTCCAACAATAA 789 0.4423 MVVIGQQEIEDRNANPSNAGTNNDASDGFETASDTDLGSDGDGNDGGTIKEEKQEHPQQQQEKSDPGRIISSDEASIDDEELKQVALVQANEAKVEGNKLFVDAKYEEALSQYELALQVAPDMPSSVEIRSICHANRGVCFLKMGKYENTVKECTKALELNPTYVKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQAGKTIRRLEPLAAVKREKMKEEMIAKLKEMGNSLLGRFGMSVDNFKAVQDPATGSYSVKFQQ 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02374 262 Pfam Tetratricopeptide repeat 133 164 IPR001440 GO:0005515
Car01g02374 262 ProSiteProfiles TPR repeat profile. 165 198 IPR019734 GO:0005515
Car01g02374 262 SMART tpr_5 131 164 IPR019734 GO:0005515
Car01g02374 262 SMART tpr_5 90 123 IPR019734 GO:0005515
Car01g02374 262 SMART tpr_5 165 198 IPR019734 GO:0005515
Car01g02374 262 MobiDBLite consensus disorder prediction 45 70 - -
Car01g02374 262 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 21 262 - -
Car01g02374 262 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 21 262 - -
Car01g02374 262 MobiDBLite consensus disorder prediction 10 33 - -
Car01g02374 262 SUPERFAMILY TPR-like 90 201 IPR011990 GO:0005515
Car01g02374 262 MobiDBLite consensus disorder prediction 1 70 - -
Car01g02374 262 Pfam Tetratricopeptide repeat 166 198 IPR013105 -
Car01g02374 262 Gene3D Tetratricopeptide repeat domain 46 230 IPR011990 GO:0005515
Car01g02374 262 ProSiteProfiles TPR repeat profile. 131 164 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02374 Car-Chr1 49529424 49532827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02374 90 232 Calmodulin-binding Proteins AT3G25230 37.748 6.50e-16 75.1