Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02341 ATGATAGTGAAAGCCTGTGATAAAGGGGAAGTGGAAGGATCTAAGTCCGTAGGTAAGATACTGGCAAGATGGAAAAAATACAATGCCCAACTTGATTCCTGCAATGATGCGGACAAGCCTGTTCGAAAAGTTCCGGCAAAAGGATCAAAGAAAGGGTGTATGAAGGGTAAAGGAGGGCCTGAGAACTCACGGTGTAATTATAGAGGTGTTAGGCAAAGGACTTGGGGGAAATGGGTTGCTGAAATCCGTGAGCCGAACAGAGGGAAAAGGTTATGGCTAGGTACTTTTTTGACTGCCATTGGTGCTGCTCTTGCATACGATGAAGCAGCCAGGGCAATGTATGGTTCTTGTGCCCGCCTCAACTTTCCCAATGTTTCGGTTCCGAGATTCTCCGAGGAATCTTCAAACGATTCTCCAGCTGCGAATCACTCCAATTCATCAATGACAGGTTCAGCAAATTCCGAGTCCATGATAATGCCAAATAACTTGGGGATAGGAGCAAAAGACGGTAATGACATGGAACCGATTTCGTTAACCTTAAGCGTAAAACAGGAGAATGAGGAAGGTGTGAATTAG 576 0.4531 MIVKACDKGEVEGSKSVGKILARWKKYNAQLDSCNDADKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGKRLWLGTFLTAIGAALAYDEAARAMYGSCARLNFPNVSVPRFSEESSNDSPAANHSNSSMTGSANSESMIMPNNLGIGAKDGNDMEPISLTLSVKQENEEGVN 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02341 191 CDD AP2 65 125 IPR001471 GO:0003700|GO:0006355
Car01g02341 191 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Car01g02341 191 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Car01g02341 191 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Car01g02341 191 MobiDBLite consensus disorder prediction 129 170 - -
Car01g02341 191 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Car01g02341 191 Gene3D AP2/ERF domain 66 125 IPR036955 GO:0003700|GO:0006355
Car01g02341 191 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 158 - -
Car01g02341 191 SUPERFAMILY DNA-binding domain 66 123 IPR016177 GO:0003677
Car01g02341 191 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 158 - -
Car01g02341 191 MobiDBLite consensus disorder prediction 129 160 - -
Car01g02341 191 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Car01g02341 191 MobiDBLite consensus disorder prediction 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02341 Car-Chr1 49213739 49215689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02341 13 127 AP2-EREBP Transcription Factor Family AT2G40350 62.185 2.73e-49 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car01g02341 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02341 - K09286 cam:101488673 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02341 01 49213739 49215689 Car06g03213 06 59326655 59329077 PCT