Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02330 ATGGACATGGATTCCTCTGCTGGTTCATCCTGTTGGCTCTATGATTATGGATTTGACATCTCTGTTGCTGCATCTGACTTCATGGCTTCTGACTCTACTACCGCTGCTTTCACTTGGATTCCTCACACGAACATCACCAACCCTCCTTCCTCCAATATCAGCTTGGAAATGGAATACTCACTCGATTCAACTGTATTGGAAAATGCCCCTTCAAAGCGGTTAAAGACAGAATCATATGCATCTGGATCCAAGGCATGTCGTGAGAAATTGCGAAGGGATAAGCTGAATGACAGGTTTCTGGAATTGAGTTCTGTCTTAGAGCCTGATAAGCTGCCCAAAACAGACAAAGTAACCTTACTAAATGATGCGGCTCGAGTGATCACACAATTACGAAATGAAGCAGAGAGATTGAAAGAAAGGAATGATGAATTACGTGAAAAAGTTAAAGAACTTAAGGCTGAGAAGAATGAGCTTCGTGACGAGAAAAATAAGCTGAAGCTAGACAAAGAAAAATTGGAGCAACAAGTCAGATCAACAACTGTTCAACAGTCAAGCTTCCTACCTAATGCCTTGGCTGCTGCTAAAGGGCAAACTGGTAGCCACAAGCTGATGCCTTTCATTGGTTATCCTGGAATTTCAATGTGGCAGTTTATGTCCCCTGCTACAGTTGATACTTCACAGGATCATCTGCTTCGACCTCCAGTTGCTTAA 711 0.4276 MDMDSSAGSSCWLYDYGFDISVAASDFMASDSTTAAFTWIPHTNITNPPSSNISLEMEYSLDSTVLENAPSKRLKTESYASGSKACREKLRRDKLNDRFLELSSVLEPDKLPKTDKVTLLNDAARVITQLRNEAERLKERNDELREKVKELKAEKNELRDEKNKLKLDKEKLEQQVRSTTVQQSSFLPNALAAAKGQTGSHKLMPFIGYPGISMWQFMSPATVDTSQDHLLRPPVA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02330 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 79 130 IPR011598 GO:0046983
Car01g02330 236 CDD bHLH_AtILR3_like 84 159 - -
Car01g02330 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 146 IPR036638 GO:0046983
Car01g02330 236 Coils Coil 120 182 - -
Car01g02330 236 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 236 - -
Car01g02330 236 SMART finulus 85 136 IPR011598 GO:0046983
Car01g02330 236 PANTHER BHLH TRANSCRIPTION FACTOR 1 236 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Car01g02330 236 Gene3D - 83 162 IPR036638 GO:0046983
Car01g02330 236 Pfam Helix-loop-helix DNA-binding domain 83 130 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02330 Car-Chr1 49091729 49093733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02330 25 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 50.226 4.65e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car01g02330 HLH 6.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02330 - - mtr:MTR_2g089000 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02330 01 49091729 49093733 Car01g02330 01 49091729 49093733 ECH