Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02324 ATGTCACACTCAACCTTCAACCTTTCTTGCTACTACTTCATGCATCCACCACCATTCCAATCTTCAAACAACAACTTTTTTGAGGGCGGGGGGATTCAACTTTTTTTGGTTTGGTTAAGGAGCAAGGGTGTCGATGTTGGAGTATTAGAGTCAACAGAAGCTGAAGAGTTCCATCCATCAGATTGCGCTCGACTTTGTTTGCGTTGCGATGGCATTGTACACTCTGCAAATTCTTTGTCTCTCAAGCATCCCCGATCGCTCCTATGTGATAAGTGCTTATTCGGCTCGGCAATTGTACGCTGTGTTGATCATAAACTATCTCTCTGTCAAGATTGTGATTGGAATTCAAATGACTGTTTTCTATTGGGACATAAGCATGTGGTACTCACTTTCTTCACTGGTTGTCCCTCTTTGGCAGACTTATCTAGGATTTGGCCTCATTTCGTCGTTGCCAATTCATCGGACAGTGCTGCTTCTTGGGAATTACCTAGTACTAATACCTTGCCTAAAATTGATAGCAACATTGACCAACATTTGGAGCAACAACATGACAAGATTTGCTTCATTGGTTTGGGAAAGGCCAAGTTGGATGAAGAAGAGCCATGTGTACCTTGGCTTGAGAAATTTCCTATTTCAAATTGCACAGCATTTTGTAAAGATCAAACATTTTTTTTTAATCAAGAGTCAAAACAACCATCAAAGATATGCCCTGATATCAACAAGGATGAAGCAATTCATGAAGGGACTAGTCTCTATGAAGGTCTCAATGTAGATGATATTCAATTAAATTTTGAAACTGTGAATGAAATTTTGGATTGCTCTCAAACTTCCACAAAATACAACCAAGAAGATGGAGGAATAGATTGTCTATTAATGGAAAATAACACAAAATGTAGCAGTCATATAATTGAGACTGCAGTCGAGGCTTCATCATCAGTTCAACAAGATTATGTAGATTATCAATCATCAGGGGCTAGTAATGCAAATTGTGCACTTATGACTCCTAGTTGCAACCAAGGCATGAGTCTTGGATTTCCTCAGAGTCAAATTCATTCAGACATATCCATTCAATTACCTACTATGATTAGTGGTGAAAACATGCCTAAAGAATTTCATGATGGAGGATTACCTCCTTGGGAATCAAATTTGGAAGGTAAATGTCCACTAGCAAGGGAGAAAGCCATAATGAGATACATGGAGAAAAAGAAAACTAGAACATTTGATAAGCAAATAAGATATGCATCTCGCAAAGCAAGGGCTGATACAAGAAAACGTGTGAAAGGTAGATTTGTTAAAGCCGGCGAAGCATATGATTATGATCCTCTTTTGAGCGACAGCTAA 1341 0.3885 MSHSTFNLSCYYFMHPPPFQSSNNNFFEGGGIQLFLVWLRSKGVDVGVLESTEAEEFHPSDCARLCLRCDGIVHSANSLSLKHPRSLLCDKCLFGSAIVRCVDHKLSLCQDCDWNSNDCFLLGHKHVVLTFFTGCPSLADLSRIWPHFVVANSSDSAASWELPSTNTLPKIDSNIDQHLEQQHDKICFIGLGKAKLDEEEPCVPWLEKFPISNCTAFCKDQTFFFNQESKQPSKICPDINKDEAIHEGTSLYEGLNVDDIQLNFETVNEILDCSQTSTKYNQEDGGIDCLLMENNTKCSSHIIETAVEASSSVQQDYVDYQSSGASNANCALMTPSCNQGMSLGFPQSQIHSDISIQLPTMISGENMPKEFHDGGLPPWESNLEGKCPLAREKAIMRYMEKKKTRTFDKQIRYASRKARADTRKRVKGRFVKAGEAYDYDPLLSDS 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02324 446 Pfam CCT motif 391 433 IPR010402 GO:0005515
Car01g02324 446 PANTHER CCT MOTIF FAMILY PROTEIN-RELATED 57 444 - -
Car01g02324 446 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 57 444 - -
Car01g02324 446 ProSiteProfiles CCT domain profile. 391 433 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02324 Car-Chr1 49063941 49067976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02324 51 441 C2C2-CO-like Transcription Factor Family AT3G21880 36.790 3.50e-65 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Car01g02324 CCT 3.6e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02324 - - cam:101499105 934.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02324 01 49063941 49067976 Car01g02324 01 49063941 49067976 ECH