Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02320 ATGGAACCCATTTGCCCTATTACCTCCACTTCTGCCAATGAAATCTCTGCTCTTCTCTCTCCTCCCTCACCTCATCAACTTCAGGAATATTACCACAACGTTTTCTCTACAAGGCACTGCAGTGACATCACAATTAAACAAGATGACAACTCTGGAAAAGGTGTGTATGCTGCAATAGACTTCAAAGAGGGGGAACTTGTTCTTAAGGACCAAATGCTTATTGATTGTTTTGTTTGTAGCTTTTGCTTTCGTTTTATTGGTTCAATAGAAACTCAAATTGGAAGGAGACTTTACTTGAATGAATTAAGGGCCAATGAGAGTCATGGTTGCGATGAAGGAAGTTCCTCAAACTCTTTGAGAAATTGTGATGAAATGGATTCAACTGATGAAGATGAGAGCACTATGCGATGTAGTTCTGGTAGTTCCAAAACTAAAGTTCCTCTACCTGATGGTGTCGTGGAATCATTGATGAATGGACAATTGAGATTGCCGTGCACTGAGAAGTTCTCCTTGCCTCCATCTGTTCCATGCCCTAGTGGATGCGGAGAAGCTTACTACTGCAGCATGTCATGTGCAGAAGCTGATTGGGAATCCTCCCATTCTTTACTCTGTACTGGTGAGAGTTCCAATCCGAGACGTAGGGAGGCGCTCCTAAATTTCATGAAACATTCTAATGAAACAAACGATATATTCCTCCTTGCTGCAAAGGCCATTTCTTCTACGATATTAAGGTACCACAAGTTAAAAGCAAATAGTCTTGCAGAGAAAGGGAAATATGATGCATCTTGTGTTTTTGACCACTACAATTTCTCTCTTCTTTTGGAAGCTTGGAGGCCTATATCAATGGGATACAAGAAAAGGTCGTGGTGGGACTGCGTTGCATTACCAGATGATATTGATTCTTCCGATGAAGCGTCATTCAGGATGCAAATAAAAGAGTTGGCATTTGAGTCTCTCCAAATTCTTAAGACGGCAATATTTGACAAGGAATGCGAGCCATTGTTCTCCCTTGAAATCTATGGACATATCATTGGCATGTTTGAGCTGAATAATCTTGATTTGGTGGTTGCTTCTCCCGTGGAGGATTACTTTTTATACATAGATGATATGATGAATCCTGATAAGGAGGAAGCTGAGAAAATTACACAACCAATTCTAGATGCTCTAGGTGAAGACTATTCTATCTGTTGCCAAGGAACTGCATTTTTTCCTTTGCAAAGCTGTATGAACCATTCCTGTTGTCCTAATGCCAAAGCTTTCAAAAGAGATGAGGATAGAGATGGCCAAGCGACCATAATTGCACTGAGGCCCATCTCTAAAGGAGAAGAGATAACTATTTCATATGTTGATGAGGACCTTCCGTTTGAGGAGAGACAAGCATCCCTTGCAGATTATGGTTTTAGATGCAGATGTCCAAAGTGCATTGAAGAAGAGACATAA 1440 0.4083 MEPICPITSTSANEISALLSPPSPHQLQEYYHNVFSTRHCSDITIKQDDNSGKGVYAAIDFKEGELVLKDQMLIDCFVCSFCFRFIGSIETQIGRRLYLNELRANESHGCDEGSSSNSLRNCDEMDSTDEDESTMRCSSGSSKTKVPLPDGVVESLMNGQLRLPCTEKFSLPPSVPCPSGCGEAYYCSMSCAEADWESSHSLLCTGESSNPRRREALLNFMKHSNETNDIFLLAAKAISSTILRYHKLKANSLAEKGKYDASCVFDHYNFSLLLEAWRPISMGYKKRSWWDCVALPDDIDSSDEASFRMQIKELAFESLQILKTAIFDKECEPLFSLEIYGHIIGMFELNNLDLVVASPVEDYFLYIDDMMNPDKEEAEKITQPILDALGEDYSICCQGTAFFPLQSCMNHSCCPNAKAFKRDEDRDGQATIIALRPISKGEEITISYVDEDLPFEERQASLADYGFRCRCPKCIEEET 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02320 479 Pfam MYND finger 175 204 IPR002893 -
Car01g02320 479 CDD SET_SMYD 388 474 - -
Car01g02320 479 SUPERFAMILY SET domain 41 472 IPR046341 -
Car01g02320 479 SUPERFAMILY HIT/MYND zinc finger-like 172 205 - -
Car01g02320 479 Gene3D - 160 206 - -
Car01g02320 479 ProSiteProfiles SET domain profile. 41 449 IPR001214 GO:0005515
Car01g02320 479 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 14 478 IPR044237 GO:0008168
Car01g02320 479 Gene3D SET domain 368 479 IPR046341 -
Car01g02320 479 Pfam SET domain 52 448 IPR001214 GO:0005515
Car01g02320 479 MobiDBLite consensus disorder prediction 107 145 - -
Car01g02320 479 SMART set_7 41 455 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Car01g02320 SET 6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02320 - - aip:107613919 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02320 01 49010575 49015540 Car01g02320 01 49010575 49015540 ECH