Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02316 ATGGCCAGCGTGGACCGCTCCTCTGAGGAAGTTTTGGCTGATTCTAAAGCAAAGCAATCCAATATTAATTCAAGTGAAGCTTCGAAGGTTGAATTTGGCAAGGATGAGGAAGCTCTTATCATGAGGATGCATAAACTGGTAGGGGATAGGTGGGGTTTAATTGCTGGAAGAATACCTGGTAGAACAGCTGAAGAAATAGAGAACTACTGGACTTCAAGAAACTCATCAGCTAGCCAATGA 240 0.4333 MASVDRSSEEVLADSKAKQSNINSSEASKVEFGKDEEALIMRMHKLVGDRWGLIAGRIPGRTAEEIENYWTSRNSSASQ 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02316 79 Gene3D - 31 73 - -
Car01g02316 79 ProSiteProfiles Myb-like domain profile. 24 74 IPR001005 -
Car01g02316 79 SMART sant 28 76 IPR001005 -
Car01g02316 79 CDD SANT 31 70 IPR001005 -
Car01g02316 79 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 6 76 - -
Car01g02316 79 SUPERFAMILY Homeodomain-like 31 72 IPR009057 -
Car01g02316 79 PANTHER TRANSCRIPTION FACTOR TRY-LIKE 6 76 - -
Car01g02316 79 MobiDBLite consensus disorder prediction 14 28 - -
Car01g02316 79 Pfam Myb-like DNA-binding domain 30 71 IPR001005 -
Car01g02316 79 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 78 IPR017930 -
Car01g02316 79 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02316 Car-Chr1 48971587 48972665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02316 24 73 MYB Transcription Factor Family AT5G14750 48.000 8.65e-15 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Car01g02316 Myb_DNA-binding 1.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02316 - - mtr:MTR_2g088730 105.145