Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02315 ATGAACGACCTTCTCACTGATTCATTTGTTAGTGAGGCTAATAATGCTCAGCCTTTTAGACAAGGTGATATTGAAATGGGAATGCAAAGAAGCAACTCGGATATGGGAATGGAAACCTTCAATAAACAGATTCAAGATGCTGATAAACAAATTGAAAAGCTCTCTGGACTACTTCAAAAGCTAAAGGAAGCTAACGAGGAATCAAAAGCTGTTACAAAAGCATCTTCCATGAAAGCTATCAAGAAGAGAATGGAAAAAGATATTGATGAAGTTGGAAAGACTGCACATGGGGTCAAAGCAAAAATAGAAGCTATCAACAGAGAAAATCTAAGCAATAGACAAAAACCTGGCTGTGAGAAGGGAACTGGTATTGACAGAGCAAGGATGAATATGACAAATGCCTTGACTAAAAAGTTCAGGGATCTCATGACAGAGTTTCAGACTCTCAGACAAAGAATACAAGATGAATATCGTGAGGTTGTGGAGAGAAGAGTTATTACAGTCACGGGAACTAGGCCAGATGATGAGACGATCGACCACTTGATAGAAACTGGAAACAGTGAGCAAATCTTCCAGAAGGCAATTCTTGAAGCAGGCCGAGGACAGGTTGTAAACACGGTAGAAGAAATTCAGGAGAGACACGATGCTGTGAAAGAAATCGAGAAAAAACTTCTTGATTTACATCAGATTTACCTTGACATGGCAGTCTTAGTTGATGCTCAAGGAGAAATTTTAGACAACATCGAAAGCCAGGTCAACAATGCAGTCGATCATGTCCAGAGAGGGACAACTGCACTTCAAACTGCTAAGAAACTTCAGAAGAACTCTCGAAAATGGATGTGCATTGCCATCATTATACTGTTAATAATAGTAGCTATCATAGTTGTGGGTGTTCTCAAACCTTGGAAGAATAACAATGGTGCTTGA 927 0.3948 MNDLLTDSFVSEANNAQPFRQGDIEMGMQRSNSDMGMETFNKQIQDADKQIEKLSGLLQKLKEANEESKAVTKASSMKAIKKRMEKDIDEVGKTAHGVKAKIEAINRENLSNRQKPGCEKGTGIDRARMNMTNALTKKFRDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDHLIETGNSEQIFQKAILEAGRGQVVNTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVNNAVDHVQRGTTALQTAKKLQKNSRKWMCIAIIILLIIVAIIVVGVLKPWKNNNGA 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02315 308 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 10 299 - -
Car01g02315 308 CDD SNARE_syntaxin1-like 206 268 - -
Car01g02315 308 CDD SynN 37 194 IPR006011 GO:0016020
Car01g02315 308 Gene3D - 200 300 - -
Car01g02315 308 PANTHER SYNTAXIN 10 299 IPR045242 -
Car01g02315 308 SMART SynN_4 32 158 IPR006011 GO:0016020
Car01g02315 308 MobiDBLite consensus disorder prediction 1 18 - -
Car01g02315 308 Gene3D - 32 161 - -
Car01g02315 308 MobiDBLite consensus disorder prediction 1 21 - -
Car01g02315 308 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
Car01g02315 308 SUPERFAMILY t-snare proteins 34 262 IPR010989 GO:0016020|GO:0016192
Car01g02315 308 Coils Coil 37 74 - -
Car01g02315 308 Pfam SNARE domain 243 295 IPR000727 -
Car01g02315 308 SMART tSNARE_6 202 269 IPR000727 -
Car01g02315 308 Pfam Syntaxin 40 242 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02315 Car-Chr1 48956072 48960160 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02315 1 308 SNARE and Associated Proteins AT3G03800 62.379 3.91e-126 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02315 K08486 - gmx:100807404 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02315 01 48956072 48960160 Car01g02315 01 48956072 48960160 ECH