Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02307 ATGCCAGCTGGTTTAATGATTCCAGCAAGAAACATGCCTTCAATGATCGGAACAAACAACGTTGGTAGTTTCGGATTTTCTTCATCTCTTTCTCTTAGCCAGCCAAACCTAATGGAAGCTGGACATCATCATCAACATCAACTTCTACCACTTGACATGCCTCAAAACACTTCAGAAAGTGATGTTCCTAGAATCCGTGAAGATGAATTGTTTGATAGTGCTACAAAATCTGGCAGTGAAAATCAAGAAGGTGGTGGTGCTTCAGGTGAAGACCAAGAACCTCGTGCTAAAAAGAAACGTTACCACCGCCATACTCAACATCAGATCCAAGAAATGGAAGCTTTCTTTAAGGAGTGTCCACACCCTGATGACAAGCAAAGGAAGGAACTAAGCAGAGAGTTAGGGTTAGAGCCATTACAAGTGAAGTTTTGGTTTCAAAACAAACGTACTCAAATGAAGACTCAACAAGAGAGGCAtgagaacacacaactaagaactgagaatgagaagcttcgtgctgataacatgagatttagagaaGCTCTTAGCAATACTTCTTGTCCTAATTGTGGTGGACCAACTGCTATTGGAGAAATGTCTTTTGATGAACATCACTTGAGGCTTGAAAATGCTCGCCTAAGAGAAGAGATTGATAGGATATCAGGCATAGCTGCAAAGTACGTAGGTAAGCCAGTAGTAAGCTATCCACTACTTTCGCCTTCATCTGTACCTCCTCGTCCTCTAGAACTCGGAATGGGTGGTTTCGGAGGGCAAGCAGGCGTAGGTGGAGACATGTATGGAGGTGGAGATCTTCTTAGATCAATCAGTGGACCAACTGAAGCTGATAAACCAATGATAATAGAGCTAGCTGTTGCTGCTATGGAGGAACTCATTGGAATGGCACAAATGGGAGATCCTCTTTGGTTGACTACACTTGAAGGCGGTTTGATACTTAATGAGGAGGAATATGTTAGGTCTTTTCCTCGAGGAATTGGTCCCAAACCTGCTGGTTTCAAGAATGAAGCTTCAAGAGAAACTTCTCTTGTCATCATGAATCATGTTAACCTTGTTGAGATTCTCATGGATGTGAATCAATGGTCCACAGTATTTTCTGGTATTGTTTCAAGAGCAATGACATTGGAAGTGCTATCAACTGGTGTGGCAGGAAATTACAATGGAGCATTACAAGTGATGACAGCAGAACTACAAGTACCATCACCACTTGTGCCAACAAGAGAGAGTTATTTTGTAAGGTATTGTAAGCAACATGGTGATGGAACATGGGCAGTAGTGGATGTTTCTTTGGACAATTTGCGTCCTAGTCCTTCTGCCAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAAATGCCCAATGGTTACTCAAAGGTTATATGGGTTGAGCATGTAGAAGTGGATGATAGAGGTGTTCATAATCTATACAAGCAGCTTGTTAGCTCTGGACATGCATTTGGTGCTAAACGTTGGATTGCAACCTTAGATCGACAATGTGAAAGACTTGCTAGTGCCATGGCAACAAACATCCCCACCGTTGATGTCGGCGTGATAACAAACCAAGATGGGAGAAAGAGTATGTTGAAACTAGCCGAAAGAATGTGTATAAGCTTTTGTGCTGGAGTGAGTGCTTCTACAGCTCACACGTGGACAACACTGTCGGGTACTGGAGCTGATGATGTAAGGGTCATGACCCGTAAAAGTGTTGATGACCCAGGAAGGCCAGCTGGCATTGTTCTTAGTGCTGCCACTTCTTTTTGGCTTCCAGTTCCACCTAAAAGAGTCTTTGAATTTCTCCGAGATGAAAACTCAAGAAGTGAGTGGGATATCCTTTCCAACGGTGGAGTTGTCCAAGAGATGGCACATATTGCTAATGGACGAGACACTGGAAATTGTGTCTCCCTACTTCGAGTGAATAGTGCAAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGTACGGACACAACAGGGTCATTTGTTATATATGCTCCAGTAGACATAGTTGCAATGAATGTGGTTCTAAATGGAGGGGATCCAGATTATGTGGCACTTCTTCCTTCAGGTTTTGCTATACTTCCAGATGGaacaacaacaacaacaacaaATGGAAGTGCTGAAAGTGGCCATGGTGGTGGATCTCTTTTGACTGTTGCATTTCAAATATTGGTTGATTCTGTTCCAACTGCAAAACTTTCACTTGGATCTGTTGCTACTGTTAATAATCTTATTGCTTGTACTGTTGAGAGGATTAAGGCTTCTTTGTCTGGTGAAGTTGCTTGA 2307 0.4105 MPAGLMIPARNMPSMIGTNNVGSFGFSSSLSLSQPNLMEAGHHHQHQLLPLDMPQNTSESDVPRIREDELFDSATKSGSENQEGGGASGEDQEPRAKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQQERHENTQLRTENEKLRADNMRFREALSNTSCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISGIAAKYVGKPVVSYPLLSPSSVPPRPLELGMGGFGGQAGVGGDMYGGGDLLRSISGPTEADKPMIIELAVAAMEELIGMAQMGDPLWLTTLEGGLILNEEEYVRSFPRGIGPKPAGFKNEASRETSLVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHGDGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCERLASAMATNIPTVDVGVITNQDGRKSMLKLAERMCISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPAGIVLSAATSFWLPVPPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDTTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTTTTTNGSAESGHGGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGEVA 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02307 768 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 50 765 IPR042160 -
Car01g02307 768 SUPERFAMILY Homeodomain-like 88 156 IPR009057 -
Car01g02307 768 Pfam Homeodomain 98 153 IPR001356 GO:0003677
Car01g02307 768 SUPERFAMILY Bet v1-like 527 760 - -
Car01g02307 768 Coils Coil 154 181 - -
Car01g02307 768 CDD homeodomain 98 156 IPR001356 GO:0003677
Car01g02307 768 Gene3D - 86 172 - -
Car01g02307 768 Pfam START domain 289 507 IPR002913 GO:0008289
Car01g02307 768 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 50 765 - -
Car01g02307 768 ProSiteProfiles START domain profile. 279 510 IPR002913 GO:0008289
Car01g02307 768 ProSiteProfiles 'Homeobox' domain profile. 95 155 IPR001356 GO:0003677
Car01g02307 768 SMART HOX_1 96 159 IPR001356 GO:0003677
Car01g02307 768 MobiDBLite consensus disorder prediction 74 107 - -
Car01g02307 768 Gene3D - 352 504 IPR023393 -
Car01g02307 768 SUPERFAMILY Bet v1-like 279 509 - -
Car01g02307 768 SMART START_1 288 507 IPR002913 GO:0008289
Car01g02307 768 CDD START_ArGLABRA2_like 283 506 - -
Car01g02307 768 ProSitePatterns 'Homeobox' domain signature. 130 153 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02307 Car-Chr1 48876362 48881184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02307 65 768 Homeobox Transcription Factor Family AT1G05230 80.508 0.0 1152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car01g02307 START 3.6e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02307 K09338 - gmx:100797992 1315.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02307 01 48876362 48881184 Car01g02307 01 48876362 48881184 ECH
Car01g02307 01 48876362 48881184 Car06g03249 06 60189057 60195193 PCT