Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02305 ATGGAGGTGATAGGGTTAAAACGGTTATTCCTCTTGGTTTTGTGGTTGTGGATTCCTAAGGAAGTTGTTGGAATGAATGGAACTACCATTGGAAACTCTACTGTTTCTTCAAGACTCAGTGTTGTTAAAATTGGAGCACTGTTTACTGTTGATTCCGTCATTGGAAGATCAGCTAAACCAGGAATCGTGGCTGCTATTGAAGATGTTAATGTTAATAAGACCATTCTCCCTGGTATTAAATTGGAAGTTATTTTACATGATACAAATTGCAGTGGGTTTCTTGGAACAGTGGAAGCTTTGCAGTTGATGGAGAATGAAGTAGTTGCAGCTATTGGTCCACAATCTTCAGGAATAGCTCATGTCATTTCTCATGTAGTTAATGAACTCCATGTACCTCTTCTTTCATTTGGGGCAACAGACCCAACTCTATCTTCTCTGCAGTATCCATATTTCGTCCGAACCACACAAAACGACTATTTTCAGATGTATGCAATTGCAGACATTGTTGATTACTATAGATGGAGGGAAGTAATTGCCATTTTTGTAGATGATGACAATGGAAGAAATGGAATATCAGTACTGGGAGACGCGCTATCGAAGAAACGCGCCAAGATCTCTTACAAGGCTGCTTTATCTCCTGGAGCCACCGAGAGTGATATCGGTGATTTGTTGAATGGTGTTAACTTAATGGAATCAAGGGTCTTTATTATTCACGTTAATCCTGATAGTGGTTTGGTTATTTTTTCCATTGCCAAGAAGCTTGGAATGATGACTAGTGGCTATGTTTGGATTGCAACAGATTGGCTTCCTTCAACTTTGGATTCAATGGAGACAGTTGACAGTAACACATTGAGTCTCCTTCAAGGTGTTGTAGCTTTAAGACATCACACTCCTGATACTAATCTCAAAAAGAGTTTTTTCTCTAGGTTGAAGAACATGAAAGGCATGGAAACTTCAAGCTTCAACTCTTATGCTTTATATGCATATGATGCTGTTTGGTTAGCAGCCTATGCTCTTGATACTTTTATCAAAGAAGGTGGAAACATATCTTTCTCATCTGACCCTAAGTTGCTTGACACAAAAGGAAGCATGCTGCATTTGTCTTCGCTCCGAGTTTTTGAAGGCGGTCCGTTGTTTCTCCCCACAATTTTTAGAATGAACTTCACTGGTTTGAGTGGTCAGATTCAGTTTGACGCAGAAAAGAATCTTGTTCATCCATCATATGATATCCTTAACATTGGTGATGCGGGTTCCCGGAGGATCGGTTATTGGTCTAATTACTCTGGTCTATCAGTTTTATCTCCAGAAAATTTATACAAGAAACCTCCAAACACTTCAACAAGCAATCAAAAACTGTTTAGTGttgtgtggcctggtgaaactacagctacaccaagaggatgGGTTTTCCCTAACAATGGAAGGCAACTGAGAATAGCAGTGCCTCATAGAATAAGCTACTTGGAGTTTGTTTCAAAGGACAAGAATCCACCTGGTGTTAGAGGCTATTGCATTGATGTCTTTGAAGCAGCCATAAACTTGTTGCCTTATCCTGTTCCACGACGATATATATTATATGGAGATGGTAATAGAAATCCCAACTACAACCAGCTTGTCAATGATGTTGCACTAAATATCTATGATGCAACTGTTGGAGATATTACAATTGTCCCAAACAGAACAAGGATTTTGGATTTCACTCAACCTTTCATGGAATCAGGGCTGGTAGTTGTTGTCCCTGTCAAGGAGATCAAATCAAGTCCTTGGTCTTTCCTCAAGCCATTCACTGCTCAAATGTGGTGCGTGACCGGCGCCTTTTTTCTTTTTGTGGGAATTGTTGTATGGATTCTTGAGCACAGGCACAATCCAGAGTTCCGTGGTTCGCCCAAGAAGCAACTTATGACAATCTTTTGGTTTACTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACTGTGAGTGGTCTTGGAAGATTTGTGCTAATCATATGGCTTTTTGTGGTGTTAATTATCAATTCAAGCTACACAGCAAGCTTAACATCCATCCTCACAGTACAGCAGCTTTCCTCACAAATTGAAGGAATTGATAGCTTGATATCAGGTACTCAACCAATTGGAATTCAAGATGGTTCATTTGCAAGAAGGTATCTTATAGATGAACTCAATATACAACCATCTAGGATAGTTACATTGAGAGATCCAAAGGCGTATATCGATGCTCTTATGCGTGGACCGTCAGGAGGAGGGGTTATGGCTATTGTTGATGAGCTTCCTTATATTGAACTCTTTATGTCTAGTACCAACTGCAAGTTCAGAACTGTTGGACAAGAGTTCACTAAAAGTGGTTGGGGATTTGTAAGTATCTTTGTTTGCATATCCATGGTTTTGATTCCTAAACTTTATCCATTTACTTTGATTGCAGATAGGCTTGTAATTTCATTGATAGCTGAGTTTATTCCATTGTTCAAAACACCAGGACTTTCTGTATTGTTATTGTTGGTCATGTCTCCTCAACCATCAGTTAGTTGTTCATATCATGGTTATTAG 2547 0.3863 MEVIGLKRLFLLVLWLWIPKEVVGMNGTTIGNSTVSSRLSVVKIGALFTVDSVIGRSAKPGIVAAIEDVNVNKTILPGIKLEVILHDTNCSGFLGTVEALQLMENEVVAAIGPQSSGIAHVISHVVNELHVPLLSFGATDPTLSSLQYPYFVRTTQNDYFQMYAIADIVDYYRWREVIAIFVDDDNGRNGISVLGDALSKKRAKISYKAALSPGATESDIGDLLNGVNLMESRVFIIHVNPDSGLVIFSIAKKLGMMTSGYVWIATDWLPSTLDSMETVDSNTLSLLQGVVALRHHTPDTNLKKSFFSRLKNMKGMETSSFNSYALYAYDAVWLAAYALDTFIKEGGNISFSSDPKLLDTKGSMLHLSSLRVFEGGPLFLPTIFRMNFTGLSGQIQFDAEKNLVHPSYDILNIGDAGSRRIGYWSNYSGLSVLSPENLYKKPPNTSTSNQKLFSVVWPGETTATPRGWVFPNNGRQLRIAVPHRISYLEFVSKDKNPPGVRGYCIDVFEAAINLLPYPVPRRYILYGDGNRNPNYNQLVNDVALNIYDATVGDITIVPNRTRILDFTQPFMESGLVVVVPVKEIKSSPWSFLKPFTAQMWCVTGAFFLFVGIVVWILEHRHNPEFRGSPKKQLMTIFWFTFSTMFFSHRENTVSGLGRFVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISGTQPIGIQDGSFARRYLIDELNIQPSRIVTLRDPKAYIDALMRGPSGGGVMAIVDELPYIELFMSSTNCKFRTVGQEFTKSGWGFVSIFVCISMVLIPKLYPFTLIADRLVISLIAEFIPLFKTPGLSVLLLLVMSPQPSVSCSYHGY 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02305 848 PIRSF IGluLR_plant 5 788 IPR017103 -
Car01g02305 848 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 29 786 - -
Car01g02305 848 Pfam Receptor family ligand binding region 62 413 IPR001828 -
Car01g02305 848 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 115 143 - -
Car01g02305 848 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 55 71 - -
Car01g02305 848 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 328 340 - -
Car01g02305 848 Pfam Ligand-gated ion channel 597 766 IPR001320 GO:0015276|GO:0016020
Car01g02305 848 Gene3D - 64 405 - -
Car01g02305 848 SUPERFAMILY Periplasmic binding protein-like II 452 786 - -
Car01g02305 848 Gene3D - 472 587 - -
Car01g02305 848 SUPERFAMILY Periplasmic binding protein-like I 40 469 IPR028082 -
Car01g02305 848 Gene3D - 157 430 - -
Car01g02305 848 Gene3D - 588 709 - -
Car01g02305 848 CDD PBP1_GABAb_receptor_plant 43 432 IPR044440 -
Car01g02305 848 Pfam Ligated ion channel L-glutamate- and glycine-binding site 494 580 IPR019594 GO:0004970|GO:0016020
Car01g02305 848 PANTHER GLUTAMATE RECEPTOR 3.4 29 786 - -
Car01g02305 848 SMART GluR_14 478 799 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02305 Car-Chr1 48864648 48868688 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02305 38 786 Ion Channels AT1G05200 69.693 0.0 1119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02305 K05387 - gmx:100799912 1271.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02305 01 48864648 48868688 Car01g02305 01 48864648 48868688 ECH