Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02304 ATGAAAAAGCAGTTTATGGTTTTGTACCTTGTGTTCTTTTGGATTTGGGTGATTCTCTTTTGTGGTATTGCTCATAGTGGAAGGCTTGAAAGTGTGAACATTGGGGCAGTATTTACCTTTGATTCGGTGATAGGTAGAGTTGCAAAGGCTTCTATGGAAATGGCTGTTTCTGATGTCAATTCTGACCCAACTGTTCTCAATGGGACTAAGCTCAATTTGATAATGAAGGATGGCATGTGTAATGCCTTTTTGGGATCAACTGGAGCTTTTCAGTTACTTGAGCAAGGAGTTGTAACCATAATTGGTCCACAATCATCCGCCATGGCTCATTCGATTTCTCAAATAGCCGATGCTGTCAAAGTTCCCCTTATTTCATATGCTGCAACTGATCCAACCCTATCATCCCTTCAATTTCCTCTCTTTTTTCGTACGGTACAAAGTGACTCAGAGCAAATGGAAGCAATGGCCAATCTGATCGACTTCAATGGATGGAAAGAGGTCATTGTTTTATTCTTGGACGATGATTATGGAAGAAATGGAATATCTGCTTTGAGTGATGAACTTGAAAAAAAGAGACTAAAAATTGCTCACAAACTAGCTTTGAGTATTTATTTTGATCTAGATGAAATCACTAAGTTGCTCAATCAAACCAAAGTATTTAGTCCCCGTGTGTTTGTCGTTCATGTCAACCCGGATCCAAGATTGAGAATTTTTTCTATTGCTCGCAAACTTCAAATGATGACCAGTGACTATGTCTGGCTAGTCACAGATTGGCTTGCTGCTACCCTACATTCATTTTCACCGGCGAATCAGAACTCTCTTAGCATTGTCGAAGGAGTTGTTGGTCTTCGTCAACACACTCCGGATTCTAGAAAAAAAAGAGCTTTTATTTCTCAATGGAAAAAGATGCAAAAAGAAGGTGTAGCAAATACTAGTTTGAACTCCTACGGATTTTTCGCTTATGATACAGTTTGGACAGTTGCACATTCGATTGATAAATTCTTGAGAGTATATAATAACATTACTTTCTTGCCTCATGAAAACAATGAGGTACGTCATACAGAAGGGATTGGTATTCAGCTTGAGAAGCTCAAAGTTTTAGCTGGTGGAAATGATCTTGTTAACATATTATTACAATCAAATTTTAGCGGCGTGAGTGGTCAAATTCGGTTTAGTTCAGACAGAAGTGTCATAAGTAGTGGTTATGATGTTATCAATATTCATCAGATGAAAATTAATAAGGTTGGTTATTGGTCTAATCACTCAGGTTTTTCTGTTGTACCACCTGAAGTTCTTGCGAAAAAGGAACATCGTATGCTTTCGATAGATCAGAAGCTCAACAATATTACTTGGCCAGGTGGGAAAACCGAAAGACCACGTGGGTGGGTGATTGCTGATAATGGAAAGCCACTGAGAATTGGAGTGCCAAAGAGAGCAAGTTTTGTTGAATTCGTAACTGAACTTCAAGATAGTCATCACGTTGAGGGTTATTGTATCGATATCTTCAAGAAAGCCTTGGAATTTATTCCATATGAAATTCCTTATGTATTCAAGCCTGTTGGAAATGGTAAAGCAAATCCCAATTATGATACACTTGTGAAAATGATTGATGAAAATGTATATGATGCAGTTGTTGGAGACATTGCGATTGTGACGAACCGGACGAAGATTGCGGACTTTTCTCAGCCTTATGCGTCATCTAGCCTTGTTATAGTGGCTCCTATCAATAGTTCAAAATCAAATGCTTGGGTATTCCTCAAACCATTCTCAGCAGATATGTGGTGTATCATTGCTGCATCATTTATGATGATTGGAATTGTTATATGGATTCTTGAGCACCGAGTCAACGATGATTTCCGTGGTCCTCCTAAGAGGCAACTTGTGACAATATTTATGTTCAGCCTCTCAACACTGTTTAAGACAAATAGTAAGAAAAAGCTCCAAACTCCAATAGTTTCTTTaatgcaaattagttttacactgacatgcaatgcaatgggagctctctttcttttcatgtcatacaattaa 2031 0.3708 MKKQFMVLYLVFFWIWVILFCGIAHSGRLESVNIGAVFTFDSVIGRVAKASMEMAVSDVNSDPTVLNGTKLNLIMKDGMCNAFLGSTGAFQLLEQGVVTIIGPQSSAMAHSISQIADAVKVPLISYAATDPTLSSLQFPLFFRTVQSDSEQMEAMANLIDFNGWKEVIVLFLDDDYGRNGISALSDELEKKRLKIAHKLALSIYFDLDEITKLLNQTKVFSPRVFVVHVNPDPRLRIFSIARKLQMMTSDYVWLVTDWLAATLHSFSPANQNSLSIVEGVVGLRQHTPDSRKKRAFISQWKKMQKEGVANTSLNSYGFFAYDTVWTVAHSIDKFLRVYNNITFLPHENNEVRHTEGIGIQLEKLKVLAGGNDLVNILLQSNFSGVSGQIRFSSDRSVISSGYDVINIHQMKINKVGYWSNHSGFSVVPPEVLAKKEHRMLSIDQKLNNITWPGGKTERPRGWVIADNGKPLRIGVPKRASFVEFVTELQDSHHVEGYCIDIFKKALEFIPYEIPYVFKPVGNGKANPNYDTLVKMIDENVYDAVVGDIAIVTNRTKIADFSQPYASSSLVIVAPINSSKSNAWVFLKPFSADMWCIIAASFMMIGIVIWILEHRVNDDFRGPPKRQLVTIFMFSLSTLFKTNSKKKLQTPIVSLMQISFTLTCNAMGALFLFMSYN 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02304 676 Gene3D - 582 676 - -
Car01g02304 676 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 15 647 - -
Car01g02304 676 SUPERFAMILY Periplasmic binding protein-like II 449 599 - -
Car01g02304 676 Gene3D - 466 581 - -
Car01g02304 676 Pfam Ligand-gated ion channel 591 662 IPR001320 GO:0015276|GO:0016020
Car01g02304 676 Gene3D - 51 399 - -
Car01g02304 676 Gene3D - 147 424 - -
Car01g02304 676 Pfam Ligated ion channel L-glutamate- and glycine-binding site 486 572 IPR019594 GO:0004970|GO:0016020
Car01g02304 676 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Car01g02304 676 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Car01g02304 676 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 236 259 - -
Car01g02304 676 PANTHER GLUTAMATE RECEPTOR 3.7 15 647 - -
Car01g02304 676 SMART GluR_14 470 676 IPR001320 GO:0015276|GO:0016020
Car01g02304 676 Pfam Receptor family ligand binding region 49 408 IPR001828 -
Car01g02304 676 CDD PBP1_GABAb_receptor_plant 33 428 IPR044440 -
Car01g02304 676 SUPERFAMILY Periplasmic binding protein-like I 31 453 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02304 Car-Chr1 48850985 48856490 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02304 28 647 Ion Channels AT2G32400 52.818 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02304 K05387 - gmx:100784247 994.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02304 01 48850985 48856490 Car01g02304 01 48850985 48856490 ECH