Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02295 ATGATTTCGAACAACAAAACAAATAGTAATAATAAGAATATTGAGGTTGACAATGAGCAAGAGGATGATGCAAGAAATGGCATAAAAAAGGGACCATGGACCCCACAAGAAGATATGATTTTGATAGAGTACGTGAACAAACATGGTGAAGGAAATTGGAATTCAGTTCAGAAAAATTCAGGGTTGTTAAGATGTGGAAAAAGCTGTAGACTTAGATGGGCTAATCATCTAAGGCCTAATCTTAAGAAAGGTGCATTTTCTGAAGAAGAAGAAAAAATCATCATTGAACTTCATGCTAAGCTTGGAAACAAATGGGCTAGAATGGCTGCTCAGTTGCCAGGAAGAACAGATAATGAAATAAAGAATTTCTGGAACACAAGGATGAAAAGGAGGCAGAGAGCAGGATTACCACTTTACCCTCCAGAAATTCATGCAGAAGCTATTGCATACAATAATCATCTAATGCAGCAACAACAAAAATATGATGAACCTTTCTCTTCTTCATCATCTTTATCATTTTCATTACTCTTATCTTCTTGTTACCCTAAGAAGCTTAATGACCAAAACCATTATAATCATCCTCTTCAAAATCAAAACAACTCTGCAGATTCTGCTAATAATCATTACACCAATGATAATCCACAGTTCAATGAAACTCTTGCATTGCAACCACATTCACCTTATCCATCTTCATCCTCAACTCTTTTCAACCAAAGTTTTAAtgctgctgctgctgctgcACCAAGTGATTTGAGCTATGATCATGGCTTCAATGCaggaggaggaggaagaggaggaggaTCAATGTATGAACCTTTTCCTTTGGTTCCGGGCGGGTCGAATACCGAGATATCTTCGAGCCAAACAACAATTGATTCTTCAAGTCCTGCTTCAAGCATGGTTAATAATAATGATTACTATGAAGTTGCACCAATATCAAATGAAGGAAATAGTGGACTTTTGGATGCTTTAGTTGTTGAAGGTAGAAACCTTTCAAGCAATGATAAGTCAAAGAGTGAGGATTCAAATGTTAAGGGGAATATTTGTTATAAGAGAAAAAGCATGGAGAGTGAAGATAGCACTATTCCTTTGGTGTCAGCCATgaagaagaagaagaagaagaagaagaagaagaaTGGAATTAGCAGTAATGAAATTCAGAAGGAAGGTTTTAGCTCTTCTCAGTTGTCAACAGGGAAGAAAGCAATTGAGGAGGATCCAATAGAAGAGATGAATTCAATGTACGATGATGATTTGCATTGCTTGCTGAACAATTTTCCAGAAATACCAATGCCTGAATGGTATTGTAGAGGAAAAAGTCAGTCATTGGGAATTGAAACTCCAACTGATCATGCTTCTTCATCATCTGGTCCCACCAATCAAGAATTTGCTTGGACTCTTGGACCCACTTGGAACAACATGCCTGGCATATGTTAA 1437 0.3486 MISNNKTNSNNKNIEVDNEQEDDARNGIKKGPWTPQEDMILIEYVNKHGEGNWNSVQKNSGLLRCGKSCRLRWANHLRPNLKKGAFSEEEEKIIIELHAKLGNKWARMAAQLPGRTDNEIKNFWNTRMKRRQRAGLPLYPPEIHAEAIAYNNHLMQQQQKYDEPFSSSSSLSFSLLLSSCYPKKLNDQNHYNHPLQNQNNSADSANNHYTNDNPQFNETLALQPHSPYPSSSSTLFNQSFNAAAAAAPSDLSYDHGFNAGGGGRGGGSMYEPFPLVPGGSNTEISSSQTTIDSSSPASSMVNNNDYYEVAPISNEGNSGLLDALVVEGRNLSSNDKSKSEDSNVKGNICYKRKSMESEDSTIPLVSAMKKKKKKKKKKNGISSNEIQKEGFSSSQLSTGKKAIEEDPIEEMNSMYDDDLHCLLNNFPEIPMPEWYCRGKSQSLGIETPTDHASSSSGPTNQEFAWTLGPTWNNMPGIC 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02295 478 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
Car01g02295 478 MobiDBLite consensus disorder prediction 188 233 - -
Car01g02295 478 MobiDBLite consensus disorder prediction 368 400 - -
Car01g02295 478 Pfam Myb-like DNA-binding domain 30 77 IPR001005 -
Car01g02295 478 Pfam Myb-like DNA-binding domain 83 126 IPR001005 -
Car01g02295 478 ProSiteProfiles Myb-like domain profile. 25 77 IPR001005 -
Car01g02295 478 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 132 IPR017930 -
Car01g02295 478 CDD SANT 32 77 IPR001005 -
Car01g02295 478 SUPERFAMILY Homeodomain-like 27 124 IPR009057 -
Car01g02295 478 MobiDBLite consensus disorder prediction 384 400 - -
Car01g02295 478 SMART sant 82 130 IPR001005 -
Car01g02295 478 SMART sant 29 79 IPR001005 -
Car01g02295 478 MobiDBLite consensus disorder prediction 1 32 - -
Car01g02295 478 Gene3D - 85 131 - -
Car01g02295 478 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 77 IPR017930 -
Car01g02295 478 Gene3D - 29 82 - -
Car01g02295 478 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 13 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02295 Car-Chr1 48728149 48731011 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02295 2 405 MYB Transcription Factor Family AT5G06100 35.642 4.66e-72 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car01g02295 Myb_DNA-binding 7.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02295 K09422 - gmx:100784779 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02295 01 48728149 48731011 Car01g02295 01 48728149 48731011 ECH