Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02290 ATGGAGATGGAGTGGACTAGAGGCAACATCATCGGACATGGTTCATCCGCCACCGTCTACCTCGCCACCTCTCCCAGCTCCTCTGATGTCTCCGCTGTGAAATCAGCGGAAACATCATTGTCATACTCAAAACATTTGGAGAGAGAACAGAGAATTCTTTCTTCTCTGTACTCTCCTTACATAGTTAGCTACAAAGGTTGCAACTTTACCAATGAAAATAACAAAAACTTGTTCAACCTCTTCATGGAGTACATGCCCTTAGGAAATCTCTCTCAAGCAACTCGCCGGAACGATGGTGGCCGGCTCAACGAACCGGCGATCGCACACTTCACAAGACAAATTTTGCAAGGACTTGAATACTTGCATACAAAAGGTATTGTGCATTGTGATATTAAAGGTAGTAACATATTGGTTTGTGAAAAAGGAGTTAAAATTGGAGACTTTGGGTGTGCAAAGATGGTAGATGAAACTGTTCCGATCGCTGGTACACCGATGTTTATGTCACCGGAGGTGGCGCGGGGCGAAGAACAAGGTTACCCTTGTGATGTTTGGTCACTTGGGTGCACTATTGTTGAAATGGCAACTGGGTTTTCACCTTGGACTAATGTGGAAGACCCTGTTACTGTTCTATATCGAATTGCATATTCTAATGATGTTCCTGAGATTCCTTGTTTTCTTTCTGAACAAGCAAAGGATTTCTTGGAGAAGTGTTTTAGAAGGGATTCTAAGGAGAGATGGAATTGTAGTCAATTGTTGAAGCATCCATTTCTTGAGGAATTTGATTCTAGTGTTGTGAAAAGTGATGAATTTGATTCAAGTTCACCAACTAGTATTCTTGAACAAGGATTTTGGAATTGTGTTGAAGAGTCAGAAAGTTTGTTTTTTGGTGATTTGGGTAAGACTAATTTTGAGAATTGTTGTGTTGGTAGGATCAAGAAGCTAGCTTTGTGTTCAAGGGAACCTTTTTGGAATTGGGGTGATGAAAATTGGATCAGTATTAGAGGGAATGATTCAGATGCAGTGGCTTCAACTAGTGATGATGATTTTGATTTTGATGAGTTAGTGAAAAGTGATGTTAATGGTGGAATTAGTGGTTATAATTTTTGTGAAGATTATAATTTTAGGAATAGTGATGTTAGTTTTGTAGTTAATAGTTTTAATTTTGAGAGTGGCATTGAAAGGTTGCAGCCCTATTCAACATTAGATTTTTTATAA 1215 0.3909 MEMEWTRGNIIGHGSSATVYLATSPSSSDVSAVKSAETSLSYSKHLEREQRILSSLYSPYIVSYKGCNFTNENNKNLFNLFMEYMPLGNLSQATRRNDGGRLNEPAIAHFTRQILQGLEYLHTKGIVHCDIKGSNILVCEKGVKIGDFGCAKMVDETVPIAGTPMFMSPEVARGEEQGYPCDVWSLGCTIVEMATGFSPWTNVEDPVTVLYRIAYSNDVPEIPCFLSEQAKDFLEKCFRRDSKERWNCSQLLKHPFLEEFDSSVVKSDEFDSSSPTSILEQGFWNCVEESESLFFGDLGKTNFENCCVGRIKKLALCSREPFWNWGDENWISIRGNDSDAVASTSDDDFDFDELVKSDVNGGISGYNFCEDYNFRNSDVSFVVNSFNFESGIERLQPYSTLDFL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02290 404 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Car01g02290 404 SUPERFAMILY Protein kinase-like (PK-like) 5 273 IPR011009 -
Car01g02290 404 Gene3D Transferase(Phosphotransferase) domain 1 2 292 - -
Car01g02290 404 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 357 - -
Car01g02290 404 Pfam Protein kinase domain 7 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02290 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Car01g02290 404 CDD STKc_MAPKKK 4 257 - -
Car01g02290 404 ProSiteProfiles Protein kinase domain profile. 5 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02290 404 PANTHER MAP KINASE KINASE KINASE 3 357 - -
Car01g02290 404 SMART serkin_6 5 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02290 Car-Chr1 48671847 48673084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02290 3 287 MAP Kinase Kinase Kinase AT2G32510 53.584 1.69e-109 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Car01g02290 Pkinase 2.6e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02290 K20716 - pvu:PHAVU_005G115900g 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02290 01 48671847 48673084 Car01g02290 01 48671847 48673084 ECH
Car01g02290 01 48671847 48673084 Car01g00677 01 5642959 5646456 ECH
Car01g02290 01 48671847 48673084 Car06g03280 06 61395244 61396533 PCT