Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02289 ATGGTGGATGATGACATATCAACTGATTCAAAAGACGAAAGAGTTAAGCTTGAGTTTGGTGTTCTTCAAGCTGAGCTAGAAAAATTGAAAGAGGAAAATTACAAACTTAGGAACATGCTTGATGAGGTTAAGAGGAATTACGACACACTTCAAATGCATTTTGCGAGTTTGATGCAAGTGAGGAAAGTTGAGGATTGTAATCAAGAGCAAGATCAAGTGTTTGAAAAGAAACAAAATGAGAATGTTGAAGTGTTGGTTCCAAGACAGTTTATGGATCTTGAATTGGCTACTACTAATTGTGATGATGAAACTTCACTTTCTCCCTGTGTTGGAAGAAGTCAAATTGAGTCAAAGTCAATTGCAAACAACATTGAGGAAGGTTCCAAAGAATTTGATCATGACAAGAATGAATCTCATAGTGGAATTGAAAGAATGGATAGTCCTCCAAAAGAACAAGTTTTAGCTGCTATTAATAACAATAATGTTCCAAGGTTTAGTCCTACAACAAATGTTGAACAAGCTGAGGCTACCATGAGGAAAACTCGAGTTTCTGTTAGAACTCGATCCGAGGCTGCTCAGATTAGTGACGGGTGTCAATGGAGAAAGTATGGACAAAAATTGGCCAAAGGAAACCCGTGTCCTCGAGCTTATTATCGATGCACTATGGCTATCGGTTGTCCAGTAAGAAAACAGGTACAAAGGTGTGCTGAAGACAGAACAATACTAGTGACAACATATGAAGGAAACCACACTCACCCTTTACCACCAGCAGCAATGGCAATGTCAAATACAACATCAGCAGCAGCAACAATGTTACTTTCAGGATCAATGTCAAGTGCTGAAGGCCTAATGAATGCAAATTTCCTAGCAAGGACAATGCTTCCTTGTTCTTCAAGCATGGCAACAATTTCAGCATCAGCTCCATTTCCAACTGTTACATTGGACTTAACTCAACCACCAAATCCCTCAAACCAGTTCCAATTTCCTTTCCTTCAAAATTTTCCAAATTCAACAACTTCATTACTGCCTCAGATAACAGCTGATCCTAACTTCACTGCAGCTTTGGCAGCTGCTATTACTTCCATTATTGGAGCTTCACTGCCAAACATTaataataataatgttagcataactgccaataataacagtaatgaaaatgctacatcaagtaacaatagcaatggaaacaataacatgaacaatCCAAATTCCTCAGGGAAAACTAGCTAG 1230 0.3626 MVDDDISTDSKDERVKLEFGVLQAELEKLKEENYKLRNMLDEVKRNYDTLQMHFASLMQVRKVEDCNQEQDQVFEKKQNENVEVLVPRQFMDLELATTNCDDETSLSPCVGRSQIESKSIANNIEEGSKEFDHDKNESHSGIERMDSPPKEQVLAAINNNNVPRFSPTTNVEQAEATMRKTRVSVRTRSEAAQISDGCQWRKYGQKLAKGNPCPRAYYRCTMAIGCPVRKQVQRCAEDRTILVTTYEGNHTHPLPPAAMAMSNTTSAAATMLLSGSMSSAEGLMNANFLARTMLPCSSSMATISASAPFPTVTLDLTQPPNPSNQFQFPFLQNFPNSTTSLLPQITADPNFTAALAAAITSIIGASLPNINNNNVSITANNNSNENATSSNNSNGNNNMNNPNSSGKTS 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02289 409 MobiDBLite consensus disorder prediction 124 146 - -
Car01g02289 409 SMART WRKY_cls 194 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car01g02289 409 Pfam WRKY DNA -binding domain 196 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car01g02289 409 PANTHER OS05G0567200 PROTEIN 345 396 - -
Car01g02289 409 PANTHER OS05G0567200 PROTEIN 1 346 - -
Car01g02289 409 SUPERFAMILY WRKY DNA-binding domain 186 255 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car01g02289 409 ProSiteProfiles WRKY domain profile. 189 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car01g02289 409 Coils Coil 12 46 - -
Car01g02289 409 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 346 IPR044810 GO:0003700
Car01g02289 409 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 345 396 IPR044810 GO:0003700
Car01g02289 409 MobiDBLite consensus disorder prediction 381 409 - -
Car01g02289 409 Gene3D WRKY domain 179 256 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02289 Car-Chr1 48643962 48648075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02289 1 318 WRKY Transcription Factor Family AT4G04450 53.030 3.35e-105 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Car01g02289 WRKY 2.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02289 - - cam:101511587 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02289 01 48643962 48648075 Car01g02289 01 48643962 48648075 ECH
Car01g02289 01 48643962 48648075 Car01g00679 01 5666373 5669334 ECH
Car01g02289 01 48643962 48648075 Car06g03282 06 61423365 61424589 PCT