Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02280 ATGGACGAGGTTCCTGTGATGGATGAGAATGAAACCAAGTCTGAGGCGCATTTGACTTCTGCTGCTGCTTTTGTTGAAGGTGGAATTCAGGATGCTTGTGATGATTCTTGTAGCATATGCCTTGAAGCCTTCTGTGACAGTGATCCTTCTACGGTGACGAGTTGCAAACACGAGTTTCATCTTCAATGTATTCTGGAATGGTGTCAGCGGAGCTCCCAGTGCCCCATGTGTTGGCAGTCTATCAGTCTCAAGGATCCAACGAGCCAGGAATTGCTCGAGGCTGTTGAGAGAGAGAGGAACTTTAGGTTCAATCCATCTAGAAATGCCACAATATTTCATCATCCAACACTGGGGGATTTTGAGTTACAGCATTTGCCAGTTGGGGCAAATGACGCTGATCTTGAAGAGCGTATAATCCAACACTTAGCTGCTGCTGCAGCAATGGGGAGAGCACGCCATATTGCTAGAAGGGAAGGCCAGAGAAATAGGTCATCTGCTCAAGGTCGCCCACAGTATTTGGTATTTTCAGCTCATCCTAATTCACCTCCCATGGCTCCTGCTTCTTCCTCTCCACCTCAGAGAGGGGATGGTGAACCAACTCCTGCTATTGCTGTTGCCGCTCTATCTCCAACCCCTGCAACTGGAGAAGAACCACCACAGCTGACTCTAGTTCCTCAAGTTCAAACTGACCAGGTTTCTGCTTCAGGATCTGGGTCTACTGCTCTTGCTACTGGCAATCATGGATTATCTCACAACATAAGGAGATCTCCTAATCAGTCTTCTCCAAGTAGCCAAGACAGAGCAGGACCATCCGAATTGCAGTCATTTTCCGAATCTCTGAAATCTAAACTAAATGCTGTGTCAACAAGATACAAAGAGTCAATTTCCAAGAGCACAAGAGGTTGGAAGGAGAGGTGGTTCTCTCGGAATAATGCTATGTCTGATCTTGGATCTGAAGTTAGGCGAGAAGTTAATGCAGGGATTGCAACTGTATCACGAATGATGGAACGCATGGAGACCAGAGACAATGATAGAAGCAGTAGCAATTCTGCTCCAAGTAATTTTGAGGATGGTCCAATTCAGGGATCAACTGATCATCAGCATTTAACAGACACTGAAAGAGACAGTCCTTTGGGAGACAATAACACAAAAACATCTTGCACTGCAGGTTCTAGTTCAAATTAA 1185 0.4574 MDEVPVMDENETKSEAHLTSAAAFVEGGIQDACDDSCSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQSISLKDPTSQELLEAVERERNFRFNPSRNATIFHHPTLGDFELQHLPVGANDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPQYLVFSAHPNSPPMAPASSSPPQRGDGEPTPAIAVAALSPTPATGEEPPQLTLVPQVQTDQVSASGSGSTALATGNHGLSHNIRRSPNQSSPSSQDRAGPSELQSFSESLKSKLNAVSTRYKESISKSTRGWKERWFSRNNAMSDLGSEVRREVNAGIATVSRMMERMETRDNDRSSSNSAPSNFEDGPIQGSTDHQHLTDTERDSPLGDNNTKTSCTAGSSSN 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02280 394 Pfam Ring finger domain 35 77 IPR001841 -
Car01g02280 394 MobiDBLite consensus disorder prediction 335 394 - -
Car01g02280 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 86 IPR013083 -
Car01g02280 394 MobiDBLite consensus disorder prediction 174 201 - -
Car01g02280 394 MobiDBLite consensus disorder prediction 345 366 - -
Car01g02280 394 ProSiteProfiles Zinc finger RING-type profile. 37 77 IPR001841 -
Car01g02280 394 MobiDBLite consensus disorder prediction 228 279 - -
Car01g02280 394 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 6 394 - -
Car01g02280 394 MobiDBLite consensus disorder prediction 379 394 - -
Car01g02280 394 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 6 394 - -
Car01g02280 394 SMART ring_2 37 77 IPR001841 -
Car01g02280 394 SUPERFAMILY RING/U-box 30 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02280 Car-Chr1 48571874 48576177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02280 34 85 C3H Transcription Factor Family AT4G00335 44.231 8.01e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02280 K19043 - gmx:100780275 640.958